Hello All
I wanna predict the functional profile of my metagenome (16s) samples. For that I tried to install the picrust via qiime 2 plugin and following the tutorial. First I ran this command
conda install -c bioconda -c conda-forge picrust2 and it successfully ran then following the tutorial I downloaded the q2-picrust plugin and enter into it by typing cd
Then trying to pip install -e I am getting some options here I am not sure what to do.
pip install [options] [package-index-options] …
pip install [options] -r [package-index-options] …
pip install [options] [-e] …
pip install [options] [-e] …
pip install [options] <archive url/path> …
I am not able to run them properly.
And secondly I have my feature.otu.biom and seq.fna obtained from closed reference otu clustering and I have exported them. Are these the right files to play with them so as to predict the functional profiles.
please guide and help out