Trouble Extracting Feature table

Technical Support
1

I am attempting to extract my feature table from QIIME1 but I receive the following error:

Traceback (most recent call last):
File “/Users/mikaylacraven/miniconda3/envs/qiime2-2020.11/bin/qiime”, line 11, in
sys.exit(qiime())
File “/Users/mikaylacraven/miniconda3/envs/qiime2-2020.11/lib/python3.6/site-packages/click/core.py”, line 829, in call
return self.main(*args, **kwargs)
File “/Users/mikaylacraven/miniconda3/envs/qiime2-2020.11/lib/python3.6/site-packages/click/core.py”, line 782, in main
rv = self.invoke(ctx)
File “/Users/mikaylacraven/miniconda3/envs/qiime2-2020.11/lib/python3.6/site-packages/click/core.py”, line 1259, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File “/Users/mikaylacraven/miniconda3/envs/qiime2-2020.11/lib/python3.6/site-packages/click/core.py”, line 1259, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File “/Users/mikaylacraven/miniconda3/envs/qiime2-2020.11/lib/python3.6/site-packages/click/core.py”, line 1066, in invoke
return ctx.invoke(self.callback, **ctx.params)
File “/Users/mikaylacraven/miniconda3/envs/qiime2-2020.11/lib/python3.6/site-packages/click/core.py”, line 610, in invoke
return callback(*args, **kwargs)
File “/Users/mikaylacraven/miniconda3/envs/qiime2-2020.11/lib/python3.6/site-packages/q2cli/builtin/tools.py”, line 50, in export_data
result = qiime2.sdk.Result.load(input_path)
File “/Users/mikaylacraven/miniconda3/envs/qiime2-2020.11/lib/python3.6/site-packages/qiime2/sdk/result.py”, line 66, in load
archiver = archive.Archiver.load(filepath)
File “/Users/mikaylacraven/miniconda3/envs/qiime2-2020.11/lib/python3.6/site-packages/qiime2/core/archive/archiver.py”, line 299, in load
archive = cls.get_archive(filepath)
File “/Users/mikaylacraven/miniconda3/envs/qiime2-2020.11/lib/python3.6/site-packages/qiime2/core/archive/archiver.py”, line 264, in get_archive
raise ValueError("%s is not a QIIME archive." % filepath)
ValueError: feature-table.qza is not a QIIME archive.

Does anyone know what I can do to fix this and extract my table?

2

I meant QIIME2, not QIIME1

1 Like
3

What does it say when you run:

qiime tools validate feature-table.qza

:qiime2:

4

Traceback (most recent call last):
File “/Users/mikaylacraven/miniconda3/envs/qiime2-2020.11/lib/python3.6/site-packages/q2cli/builtin/tools.py”, line 409, in validate
result = qiime2.sdk.Result.load(path)
File “/Users/mikaylacraven/miniconda3/envs/qiime2-2020.11/lib/python3.6/site-packages/qiime2/sdk/result.py”, line 66, in load
archiver = archive.Archiver.load(filepath)
File “/Users/mikaylacraven/miniconda3/envs/qiime2-2020.11/lib/python3.6/site-packages/qiime2/core/archive/archiver.py”, line 299, in load
archive = cls.get_archive(filepath)
File “/Users/mikaylacraven/miniconda3/envs/qiime2-2020.11/lib/python3.6/site-packages/qiime2/core/archive/archiver.py”, line 264, in get_archive
raise ValueError("%s is not a QIIME archive." % filepath)
ValueError: feature-table.qza is not a QIIME archive.

There was a problem loading feature-table.qza as a QIIME 2 Result:

feature-table.qza is not a QIIME archive.

See above for debug info.

5

Hmm, it kinda looks to me like the file has been corrupted. Did you email it, or transfer it from a network drive? Any moving or copying done? That is usually a good place to retrace your footsteps and make sure things didn’t get messed up there. If you want, you can DM me a link to access the feature table and I can try to take a closer look.

6

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