trimming adapter prior to deblur denoising

[turtle]

I have some sequences and I want to trim the adapter and later want to perform deblur denoising. Here is the
paired_reads.qzv (339.9 KB)
file.

How I can trim the 1st few bases and do deblur denoising after trimming?

[colinbrislawn (Colin J Brislawn)]

Here are the docs for deblur denoise-other:
https://docs.qiime2.org/2023.5/plugins/available/deblur/denoise-other/

@turtle

How I can trim the 1st few bases

I would try using:

--p-left-trim-len INTEGER
    Range(0, None)       Sequence trimming from the 5' end. A value of 0 will
                         disable this trim.    

This is built into deblur, so you can do it all in one step!