Trim/Truncate Interactive Quality Plot

I am trying to interpret the Interactive Quality Plot before it is denoised. I have Illumina sequenced reads (paired-end) How would I determine my values for:

--p-trunc-len-r \
--p-trim-left-r \


Hello @Cedric_Shamley_Jr,

Consider reading through some of the tutorials at to get a sense for how to do this. This tutorial, for example.

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