Trim/Truncate Interactive Quality Plot

[Cedric_Shamley_Jr]

I am trying to interpret the Interactive Quality Plot before it is denoised. I have Illumina sequenced reads (paired-end) How would I determine my values for:

--p-trunc-len-f
--p-trim-left-f
--p-trunc-len-r \
--p-trim-left-r \

/Users/soilmicrobialglobalchangelab/Library/CloudStorage/OneDrive-UniversityofTexasatElPaso/RamirezLab/CedricWind/visualizationdemux-paired-end.qzv

[colinvwood (Colin Wood)]

Hello @Cedric_Shamley_Jr,

Consider reading through some of the tutorials at docs.qiime2.org to get a sense for how to do this. This tutorial, for example.