Hi, @ptalebic
Applying the workflow documented in Feature classifier tutorial can be a bit confusing at first. Luckily, there are already some discussions here on the forum about these points of confusion! Searching the forum for terms like "Greengenes" and "taxonomic classification" etc. will yield some helpful results:
Here are a few links with discussion relevant to your specific questions to get you started:
Hi, everyone. I am Mavis, sorry to bother you, I really need some help.
Today I want to generate taxonomy.qza with greengenes 16s database, and I downloaded the newest greengenes 16S rRNA database from the data resources page and chose the one named 13_8 .
I noticed the words which say before I use this, I need to import it into artifacts. So I unzip the gz file. However I can't see the unzipped file type from my computer .
So my question is, what is the type of this file and what command sho…
Hi,
I have a general question about importing the 13_8 Greengenes database into QIIME2 in order to train it as a classifier. I am using QIIME2 version 2019.1 on VirtualBox on a Mac.
I clicked the link from the data resources page, and the resulting files are in my downloads as gg_13_8_otus.tar.gz and gg_3_8_otus.tar.gz.cpgz
My question is what is the import command to import the database into QIIME? I've looked around the forum and at the training classifier/importing data pages, but I can't …
Best of luck!
