Dear qiimers, I am trying to import files into qiime2 format. My files are fastq files (one reverse and one forward per sample) and I created a fastq manifest following the guidelines of the "importing" tutorial. I tried to run it on 4 files to start with and it worked pretty quickly (and I could …

Hi @Estelle --- this step can take a while, and unfortunately there isn't a really great rule-of-thumb for estimating the runtime (it is a function number of samples, read counts, etc). If it is going to error, it will do so noisily, so if you haven't seen anything yet, you should be in good shape, …

Hi @thermokarst , Still running :slightly_smiling_face: Thanks for the answer, I am going to wait, I only have the node for 12 hours...hopefully it will be enough. I noticed it is using only 1 CPU at 100%, would it be possible to use more than 1, or it is not built like that? Thanks Estelle

Hi @thermokarst , It took 7h to complete! But it looks like it worked! La patience est la reine des vertues. Thanks Estelle

[image] Estelle: It took 7h to complete! But it looks like it worked! Woohoo!!!! That is great news :tada::fireworks::heart::gem: [image] Estelle: would it be possible to use more than 1, or it is not built like that? We don't currently support parallel demultiplexing, sorry! Good lu…

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Tools import PairedEndFastqManifestPhred33 is taking forever

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import, fastq-manifest

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