I have tried to use the pre-trained SILVA classifier to classify my sequences. I have re-downloaded the classifier, rerun the classification (via qiime feature-classifier classify-sklearn), and remade the visualization (qiime metadata tabulate) multiple times. Each time I try to view the visualization (via qiime tools view or via view.qiime2.org) it will not load. All that shows up is the QIIME 2 logo and the works “Export options:”. I have no idea if there was a problem with the classifier, or if the visualization just isn’t loading. Any ideas?
Hi @mmcintosh! Would you be able to share that visualization with us? We recently fixed a bug in
q2-metadata that was causing the
tabulate viz to explode. That fix is scheduled to go out in the upcoming 2018.2 release. I suspect you ran into the same problem here, but a quick double-check wouldn’t hurt. Thanks!
@thermokarst, here's the visualization. Hope this helps.
18StaxonomySILVA.qzv (1.2 MB)
Thanks, @thermokarst. I’ll see what I can figure out before then, or wait for the new release.
QIIME 2 2018.2 is out now, and it includes several bugfixes to this visualization, as well as some other fun enhancements. Check it out!
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