Hi QIIME2 Community,
I am having an issue with the qiime taxa filter-table command. I am using qiime2-2019.4 installed on conda. Specifically, my issue is with the --p-exclude parameter. I want to exclude certain taxa from my data set. The taxa filter command completes without throwing any errors; however, when I pop the barplot into Qiime2View, the taxa are still there. Please find the code I ran below.
qiime taxa filter-table --i-table table-NoMorC.qza --i-taxonomy classify/classification.qza --p-exclude “k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;;” --o-filtered-table table-NoE.qza
Any help with this issue would be greatly appreciated.