Sum of squares tree and dendrogram

[mjlopez]

Dear all,

I would like to know if the taxa I got from the longest branch of the sum of squares tree it could be the same taxa I find in the dendrogram. Second question, is there any way to get the taxa from the dendrogram plot.

Here is my Sum Squares tree.

Thanks

[mortonjt (Jamie Morton)]

Hi @mjlopez, no you cannot get taxa easily. I recommend taking a look at empress GitHub - biocore/empress: A fast and scalable phylogenetic tree viewer for microbiome data analysis

We also have upcoming documentation how to incorporate findings from gneiss into empress
https://github.com/knightlab-analyses/empress-analyses/pulls

These proposed changes will be in the 2021 q2 release.