Subject: Need help with Qiime2 installation: ResolvePackageNotFound error
Dear Qiime2 Community,
I hope this message finds you well. I am currently facing an issue during the installation of Qiime2 and would greatly appreciate your assistance in resolving it.
During the installation process, after following the Qiime2 instructions, I encountered the following error:
diff
Collecting package metadata (repodata.json): done
Solving environment: failed
- scikit-bio=0.5.7 - provenance-lib=2023.5.1 - libgpg-error=1.46 - r-base=4.2.3 - gcc_impl_linux-64=12.2.0 - q2-phylogeny=2023.5.0 - r-xml2=1.3.4 - q2-taxa=2023.5.0 - bioconductor-sparsematrixstats=1.10.0 - bioconductor-xvector=0.38.0 - bioconductor-shortread=1.56.0 - q2-feature-classifier=2023.5.0 - q2-longitudinal=2023.5.0 - bioconductor-decipher=2.26.0 - htslib=1.17 - libsanitizer=12.2.0 - fasttree=2.1.11 - q2-feature-table=2023.5.0 - libedit=3.1.20191231 - sed=4.8 - libxkbcommon=1.5.0 - libuuid=2.38.1 - q2-dada2=2023.5.0 - q2-cutadapt=2023.5.1 - libstdcxx-ng=12.2.0 - libsystemd0=253 - bioconductor-dada2=1.26.0 - perl-compress-raw-zlib=2.202 - xcb-util=0.4.0 - bioconductor-iranges=2.32.0 - q2-vsearch=2023.5.0 - alsa-lib=1.2.8 - nspr=4.35 - gfortran_impl_linux-64=12.2.0 - r-mass=7.3_60 - sepp=4.3.10 - bioconductor-genomicalignments=1.34.0 - libgcc-ng=12.2.0 - libunistring=0.9.10 - xcb-util-renderutil=0.3.9 - nss=3.89 - hmmer=3.1b2 - bioconductor-dirichletmultinomial=1.40.0 - emperor=1.0.3 - entrez-direct=16.2 - bioconductor-s4vectors=0.36.0 - bioconductor-rhdf5lib=1.20.0 - q2-fragment-insertion=2023.5.0 - binutils_impl_linux-64=2.40 - q2-mystery-stew=2023.5.0 - attr=2.5.1 - libev=4.33 - bioconductor-rsamtools=2.14.0 - libidn2=2.3.4 - bioconductor-beachmat=2.14.0 - q2galaxy=2023.5.0 - tktable=2.10 - bioconductor-zlibbioc=1.44.0 - unifrac-binaries=1.1.1 - libgfortran5=12.2.0 - bioconductor-biocsingular=1.14.0 - unifrac=1.1.1 - q2-types=2023.5.0 - _openmp_mutex=4.5 - libgcrypt=1.10.1 - blast=2.14.0 - gmp=6.2.1 - bioconductor-scuttle=1.8.0 - bioconductor-biocparallel=1.32.5 - xcb-util-image=0.4.0 - q2-composition=2023.5.0 - q2-metadata=2023.5.0 - q2-alignment=2023.5.0 - bioconductor-biostrings=2.66.0 - perl-json-xs=2.34 - perl-io-compress=2.201 - perl-list-moreutils-xs=0.430 - q2-quality-control=2023.5.0 - libstdcxx-devel_linux-64=12.2.0 - q2templates=2023.5.0 - libnghttp2=1.52.0 - ncurses=6.3 - bioconductor-rhdf5filters=1.10.0 - keyutils=1.6.1 - bioconductor-multtest=2.54.0 - dbus=1.13.6 - libcap=2.67 - perl-pathtools=3.75 - libgcc-devel_linux-64=12.2.0 - iow=1.0.5 - q2-deblur=2023.5.0 - samtools=1.17 - xcb-util-wm=0.4.1 - vsearch=2.22.1 - libgomp=12.2.0 - perl-compress-raw-bzip2=2.201 - q2-gneiss=2023.5.0 - bowtie2=2.5.1 - bioconductor-biobase=2.58.0 - qiime2=2023.5.1 - sortmerna=2.0 - bioconductor-delayedarray=0.24.0 - dnaio=0.10.0 - xcb-util-keysyms=0.4.0 - perl-storable=3.15 - readline=8.2 - q2-demux=2023.5.0 - libnsl=2.0.0 - raxml=8.2.12 - q2-diversity=2023.5.1 - q2-emperor=2023.5.0 - ld_impl_linux-64=2.40 - mafft=7.520 - bioconductor-genomicranges=1.50.0 - bioconductor-rhtslib=2.0.0 - xkeyboard-config=2.38 - libcups=2.3.3 - bioconductor-biocneighbors=1.16.0 - pulseaudio-client=16.1 - pbzip2=1.1.13 - q2-sample-classifier=2023.5.0 - wget=1.20.3 - perl-scalar-list-utils=1.63 - bioconductor-rhdf5=2.42.0 - libgfortran-ng=12.2.0 - cutadapt=4.4 - q2cli=2023.5.1 - gxx_impl_linux-64=12.2.0 - q2-quality-filter=2023.5.0 - q2-diversity-lib=2023.5.0 - iqtree=2.2.2.3
...
My Conda version is v23.5.0, and I followed the provided instructions:
- Downloaded the Qiime2 distribution file using the wget command:
wget https://data.qiime2.org/distro/core/qiime2-2023.5-py38-linux-conda.yml
- Created a new Conda environment using the following command:
conda env create -n qiime2-2023.5 --file qiime2-2023.5-py38-linux-conda.ym
- The only thing I did differently was installing wget through this command:
conda install -c rmg wget
as opposed to using "conda install wget".
However, the ResolvePackageNotFound error persists.
I would be grateful if you could provide guidance on resolving this issue. If there are alternative methods or troubleshooting steps I can try, please let me know. Any assistance you can offer to help me successfully install Qiime2 would be highly appreciated.
Thank you very much for your time and support.