Hi everyone!
I was using QIIME2 2024.5 perfectly and when I tried to install the picrust2 plugin manually for further analysis, it showed me the message:
QIIME is caching your current deployment for improved performance.
And then i wasn't able to use qiime2 anymore. So I looked for help in the forum and saw someone unistalled and installed again and worked, so I did that. However I kept having errors trying to install qiime2 again so i decided to clean up all my conda envs and install again miniconda3.
Then when I tried to install qiime2 again I had this message:
conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py38-osx-conda.yml
Channels:
- https://packages.qiime2.org/qiime2/2024.5/amplicon/released
- bioconda
- conda-forge
- defaults
Platform: osx-arm64
Collecting package metadata (repodata.json): done
Solving environment: failed
Channels:
- https://packages.qiime2.org/qiime2/2024.5/amplicon/released
- bioconda
- conda-forge
- defaults
Platform: osx-arm64
Collecting package metadata (repodata.json): done
Solving environment: failed
LibMambaUnsatisfiableError: Encountered problems while solving:
- nothing provides requested xopen 2.0.1**
- nothing provides requested vsearch 2.22.1**
- nothing provides requested unifrac-binaries 1.4**
- nothing provides requested unifrac 1.3**
- nothing provides requested sortmerna 2.0**
- nothing provides requested sepp 4.4.0**
- nothing provides requested samtools 1.20**
- nothing provides requested rescript 2024.5.0**
- nothing provides requested raxml 8.2.13**
- nothing provides requested r-scs 3.2.4**
- nothing provides requested r-rsqlite 2.3.4**
- nothing provides requested r-rcppml 0.3.7**
- nothing provides requested r-osqp 0.6.3.2**
- nothing provides requested r-gsl 2.1_8**
- nothing provides requested r-energy 1.7_11**
- nothing provides requested r-ecosolver 0.5.5**
- nothing provides requested r-cvxr 1.0_12**
- nothing provides requested r-ade4 1.7_22**
- nothing provides requested qiime2 2024.5.0**
- nothing provides requested q2templates 2024.5.0**
- nothing provides requested q2galaxy 2024.5.0**
- nothing provides requested q2cli 2024.5.0**
- nothing provides requested q2-vsearch 2024.5.0**
- nothing provides requested q2-types 2024.5.0**
- nothing provides requested q2-taxa 2024.5.0**
- nothing provides requested q2-sample-classifier 2024.5.0**
- nothing provides requested q2-quality-filter 2024.5.0**
- nothing provides requested q2-quality-control 2024.5.0**
- nothing provides requested q2-phylogeny 2024.5.0**
- nothing provides requested q2-mystery-stew 2024.5.0**
- nothing provides requested q2-metadata 2024.5.0**
- nothing provides requested q2-longitudinal 2024.5.0**
- nothing provides requested q2-fragment-insertion 2024.5.0**
- nothing provides requested q2-feature-table 2024.5.0**
- nothing provides requested q2-feature-classifier 2024.5.0**
- nothing provides requested q2-emperor 2024.5.0**
- nothing provides requested q2-diversity-lib 2024.5.0**
- nothing provides requested q2-diversity 2024.5.0**
- nothing provides requested q2-demux 2024.5.0**
- nothing provides requested q2-deblur 2024.5.0**
- nothing provides requested q2-dada2 2024.5.0**
- nothing provides requested q2-cutadapt 2024.5.0**
- nothing provides requested q2-composition 2024.5.0**
- nothing provides requested q2-alignment 2024.5.0**
- nothing provides requested python-isal 1.6.1**
- nothing provides requested perl-storable 3.15**
- nothing provides requested perl-scalar-list-utils 1.63**
- nothing provides requested perl-pathtools 3.75**
- nothing provides requested perl-list-moreutils-xs 0.430**
- nothing provides perl-list-moreutils-xs >=0.430 needed by perl-list-moreutils-0.430-pl5321hdfd78af_0
- nothing provides requested perl-json-xs 2.34**
- nothing provides perl-json-xs <3 needed by perl-json-4.10-pl5321hdfd78af_0
- nothing provides requested perl-io-compress 2.201**
- nothing provides requested perl-encode 3.21**
- nothing provides requested perl-compress-raw-zlib 2.202**
- nothing provides requested perl-compress-raw-bzip2 2.201**
- nothing provides perl-io-compress needed by perl-archive-tar-2.40-pl5321hdfd78af_0
- nothing provides requested ncbi-vdb 3.1.1**
- nothing provides requested mafft 7.520**
- nothing provides requested isa-l 2.31.0**
- nothing provides requested iqtree 2.3.4**
- nothing provides requested iow 1.0.5**
- nothing provides requested htslib 1.20**
- nothing provides requested hmmer 3.1b2**
- nothing provides requested fasttree 2.1.11**
- nothing provides requested entrez-direct 21.6**
- nothing provides requested emperor 1.0.4**
- nothing provides requested dnaio 1.2.0**
- nothing provides mafft >=7.394 needed by deblur-1.1.1-pyhdfd78af_0
- nothing provides requested cutadapt 4.8**
- nothing provides requested bowtie2 2.5.4**
- nothing provides requested blast 2.15.0**
- nothing provides requested bioconductor-zlibbioc 1.48.0**
- nothing provides requested bioconductor-xvector 0.42.0**
- nothing provides bioconductor-biocparallel >=1.36.0,<1.37.0 needed by bioconductor-treesummarizedexperiment-2.10.0-r43hdfd78af_0
- nothing provides bioconductor-biobase >=2.62.0,<2.63.0 needed by bioconductor-summarizedexperiment-1.32.0-r43hdfd78af_0
- nothing provides requested bioconductor-sparsematrixstats 1.14.0**
- nothing provides requested bioconductor-sparsearray 1.2.2**
- nothing provides bioconductor-delayedarray >=0.28.0,<0.29.0 needed by bioconductor-singlecellexperiment-1.24.0-r43hdfd78af_0
- nothing provides requested bioconductor-shortread 1.60.0**
- nothing provides requested bioconductor-scuttle 1.12.0**
- nothing provides bioconductor-beachmat >=2.18.0,<2.19.0 needed by bioconductor-scater-1.30.1-r43hdfd78af_0
- nothing provides bioconductor-delayedarray >=0.28.0,<0.29.0 needed by bioconductor-scaledmatrix-1.10.0-r43hdfd78af_0
- nothing provides requested bioconductor-s4vectors 0.40.2**
- nothing provides requested bioconductor-s4arrays 1.2.0**
- nothing provides requested bioconductor-rsamtools 2.18.0**
- nothing provides requested bioconductor-rhtslib 2.4.0**
- nothing provides requested bioconductor-rhdf5lib 1.24.0**
- nothing provides requested bioconductor-rhdf5filters 1.14.1**
- nothing provides requested bioconductor-rhdf5 2.46.1**
- nothing provides bioconductor-biobase >=2.62.0,<2.63.0 needed by bioconductor-phyloseq-1.46.0-r43hdfd78af_0
- nothing provides requested bioconductor-multtest 2.58.0**
- nothing provides bioconductor-biobase >=2.62.0,<2.63.0 needed by bioconductor-multiassayexperiment-1.28.0-r43hdfd78af_0
- nothing provides bioconductor-biocparallel >=1.36.0,<1.37.0 needed by bioconductor-mia-1.10.0-r43hdfd78af_0
- nothing provides requested bioconductor-iranges 2.36.0**
- nothing provides requested bioconductor-genomicranges 1.54.1**
- nothing provides requested bioconductor-genomicalignments 1.38.0**
- nothing provides requested bioconductor-dirichletmultinomial 1.44.0**
- nothing provides bioconductor-delayedarray >=0.28.0,<0.29.0 needed by bioconductor-delayedmatrixstats-1.24.0-r43hdfd78af_0
- nothing provides requested bioconductor-delayedarray 0.28.0**
- nothing provides requested bioconductor-decipher 2.30.0**
- nothing provides requested bioconductor-dada2 1.30.0**
- nothing provides requested bioconductor-bluster 1.12.0**
- nothing provides requested bioconductor-biostrings 2.70.1**
- nothing provides bioconductor-rhdf5 >=2.46.0,<2.47.0 needed by bioconductor-biomformat-1.30.0-r43hdfd78af_0
- nothing provides requested bioconductor-biocsingular 1.18.0**
- nothing provides requested bioconductor-biocparallel 1.36.0**
- nothing provides requested bioconductor-biocneighbors 1.20.0**
- nothing provides requested bioconductor-biobase 2.62.0**
- nothing provides requested bioconductor-beachmat 2.18.0**
- nothing provides bioconductor-s4vectors >=0.40.0,<0.41.0 needed by bioconductor-ancombc-2.4.0-r43hdfd78af_0
- nothing provides bioconductor-iranges >=2.36.0,<2.37.0 needed by bioconductor-genomeinfodb-1.38.1-r43hdfd78af_0
Could not solve for environment specs
The following packages are incompatible
├─ bioconductor-ancombc 2.4.0** is not installable because it requires
│ └─ bioconductor-s4vectors >=0.40.0,<0.41.0 , which does not exist (perhaps a missing channel);
├─ bioconductor-beachmat 2.18.0** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-biobase 2.62.0** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-biocneighbors 1.20.0** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-biocparallel 1.36.0** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-biocsingular 1.18.0** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-biomformat 1.30.0** is not installable because it requires
│ └─ bioconductor-rhdf5 >=2.46.0,<2.47.0 , which does not exist (perhaps a missing channel);
├─ bioconductor-biostrings 2.70.1** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-bluster 1.12.0** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-dada2 1.30.0** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-decipher 2.30.0** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-delayedarray 0.28.0** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-delayedmatrixstats 1.24.0** is not installable because it requires
│ └─ bioconductor-delayedarray >=0.28.0,<0.29.0 , which does not exist (perhaps a missing channel);
├─ bioconductor-dirichletmultinomial 1.44.0** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-genomeinfodb 1.38.1** is not installable because it requires
│ └─ bioconductor-iranges >=2.36.0,<2.37.0 , which does not exist (perhaps a missing channel);
├─ bioconductor-genomicalignments 1.38.0** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-genomicranges 1.54.1** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-iranges 2.36.0** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-mia 1.10.0** is not installable because it requires
│ └─ bioconductor-biocparallel >=1.36.0,<1.37.0 , which does not exist (perhaps a missing channel);
├─ bioconductor-multiassayexperiment 1.28.0** is not installable because it requires
│ └─ bioconductor-biobase >=2.62.0,<2.63.0 , which does not exist (perhaps a missing channel);
├─ bioconductor-multtest 2.58.0** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-phyloseq 1.46.0** is not installable because it requires
│ └─ bioconductor-biobase >=2.62.0,<2.63.0 , which does not exist (perhaps a missing channel);
├─ bioconductor-rhdf5 2.46.1** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-rhdf5filters 1.14.1** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-rhdf5lib 1.24.0** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-rhtslib 2.4.0** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-rsamtools 2.18.0** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-s4arrays 1.2.0** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-s4vectors 0.40.2** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-scaledmatrix 1.10.0** is not installable because it requires
│ └─ bioconductor-delayedarray >=0.28.0,<0.29.0 , which does not exist (perhaps a missing channel);
├─ bioconductor-scater 1.30.1** is not installable because it requires
│ └─ bioconductor-beachmat >=2.18.0,<2.19.0 , which does not exist (perhaps a missing channel);
├─ bioconductor-scuttle 1.12.0** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-shortread 1.60.0** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-singlecellexperiment 1.24.0** is not installable because it requires
│ └─ bioconductor-delayedarray >=0.28.0,<0.29.0 , which does not exist (perhaps a missing channel);
├─ bioconductor-sparsearray 1.2.2** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-sparsematrixstats 1.14.0** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-summarizedexperiment 1.32.0** is not installable because it requires
│ └─ bioconductor-biobase >=2.62.0,<2.63.0 , which does not exist (perhaps a missing channel);
├─ bioconductor-treesummarizedexperiment 2.10.0** is not installable because it requires
│ └─ bioconductor-biocparallel >=1.36.0,<1.37.0 , which does not exist (perhaps a missing channel);
├─ bioconductor-xvector 0.42.0** does not exist (perhaps a typo or a missing channel);
├─ bioconductor-zlibbioc 1.48.0** does not exist (perhaps a typo or a missing channel);
├─ blast 2.15.0** does not exist (perhaps a typo or a missing channel);
├─ bowtie2 2.5.4** does not exist (perhaps a typo or a missing channel);
├─ cutadapt 4.8** does not exist (perhaps a typo or a missing channel);
├─ deblur 1.1.1** is not installable because it requires
│ └─ mafft >=7.394 , which does not exist (perhaps a missing channel);
├─ dnaio 1.2.0** does not exist (perhaps a typo or a missing channel);
├─ emperor 1.0.4** does not exist (perhaps a typo or a missing channel);
├─ entrez-direct 21.6** does not exist (perhaps a typo or a missing channel);
├─ fasttree 2.1.11** does not exist (perhaps a typo or a missing channel);
├─ hmmer 3.1b2** does not exist (perhaps a typo or a missing channel);
├─ htslib 1.20** does not exist (perhaps a typo or a missing channel);
├─ iow 1.0.5** does not exist (perhaps a typo or a missing channel);
├─ iqtree 2.3.4** does not exist (perhaps a typo or a missing channel);
├─ isa-l 2.31.0** does not exist (perhaps a typo or a missing channel);
├─ mafft 7.520** does not exist (perhaps a typo or a missing channel);
├─ ncbi-vdb 3.1.1** does not exist (perhaps a typo or a missing channel);
├─ perl-archive-tar 2.40** is not installable because it requires
│ └─ perl-io-compress, which does not exist (perhaps a missing channel);
├─ perl-compress-raw-bzip2 2.201** does not exist (perhaps a typo or a missing channel);
├─ perl-compress-raw-zlib 2.202** does not exist (perhaps a typo or a missing channel);
├─ perl-encode 3.21** does not exist (perhaps a typo or a missing channel);
├─ perl-io-compress 2.201** does not exist (perhaps a typo or a missing channel);
├─ perl-json-xs 2.34** does not exist (perhaps a typo or a missing channel);
├─ perl-json 4.10** is not installable because it requires
│ └─ perl-json-xs <3 , which does not exist (perhaps a missing channel);
├─ perl-list-moreutils-xs 0.430** does not exist (perhaps a typo or a missing channel);
├─ perl-list-moreutils 0.430** is not installable because it requires
│ └─ perl-list-moreutils-xs >=0.430 , which does not exist (perhaps a missing channel);
├─ perl-pathtools 3.75** does not exist (perhaps a typo or a missing channel);
├─ perl-scalar-list-utils 1.63** does not exist (perhaps a typo or a missing channel);
├─ perl-storable 3.15** does not exist (perhaps a typo or a missing channel);
├─ python-isal 1.6.1** does not exist (perhaps a typo or a missing channel);
├─ q2-alignment 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2-composition 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2-cutadapt 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2-dada2 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2-deblur 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2-demux 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2-diversity-lib 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2-diversity 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2-emperor 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2-feature-classifier 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2-feature-table 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2-fragment-insertion 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2-longitudinal 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2-metadata 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2-mystery-stew 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2-phylogeny 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2-quality-control 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2-quality-filter 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2-sample-classifier 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2-taxa 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2-types 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2-vsearch 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2cli 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2galaxy 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ q2templates 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ qiime2 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ r-ade4 1.7_22** does not exist (perhaps a typo or a missing channel);
├─ r-cvxr 1.0_12** does not exist (perhaps a typo or a missing channel);
├─ r-ecosolver 0.5.5** does not exist (perhaps a typo or a missing channel);
├─ r-energy 1.7_11** does not exist (perhaps a typo or a missing channel);
├─ r-gsl 2.1_8** does not exist (perhaps a typo or a missing channel);
├─ r-osqp 0.6.3.2** does not exist (perhaps a typo or a missing channel);
├─ r-rcppml 0.3.7** does not exist (perhaps a typo or a missing channel);
├─ r-rsqlite 2.3.4** does not exist (perhaps a typo or a missing channel);
├─ r-scs 3.2.4** does not exist (perhaps a typo or a missing channel);
├─ raxml 8.2.13** does not exist (perhaps a typo or a missing channel);
├─ rescript 2024.5.0** does not exist (perhaps a typo or a missing channel);
├─ samtools 1.20** does not exist (perhaps a typo or a missing channel);
├─ sepp 4.4.0** does not exist (perhaps a typo or a missing channel);
├─ sortmerna 2.0** does not exist (perhaps a typo or a missing channel);
├─ unifrac-binaries 1.4** does not exist (perhaps a typo or a missing channel);
├─ unifrac 1.3** does not exist (perhaps a typo or a missing channel);
├─ vsearch 2.22.1** does not exist (perhaps a typo or a missing channel);
└─ xopen 2.0.1** does not exist (perhaps a typo or a missing channel).
SOS please, I'm new in QIIME2 and a relative new bioinformatician as well, i dont know what else to do