Similarity when sequence of ASV is aligned to PICRUSt2 reference sequence

[songej486]

Hello,

I am trying to analysis the picrust2 result using qiime2 output.

I wonder how much similarity is the standard when representative sequence of ASV is aligned to PICRUSt2 reference sequence. If --min-align is an option corresponding to similarity, I wonder what the default is.

Thanks a lot

[cherman2 (Chloe Herman)]

Hi @songej486,
Welcome to the :qiime2: forum!
The default value is 0.8. I found this by running qiime picrust2 full-pipeline --help.

Hope that helps!

[songej486]

Hi @cherman2
Thank you very much for your answer.
It was of great help to me.