SILVA or Greengene

[SoilRotifer (Mike Robeson)]

Hi @farhad1990,

I just wanted to add that we've recently made it much easier for you to make your own SILVA classifier. Check out the RESCRIPt tutorial:

Processing, filtering, and evaluating the SILVA database (and other reference sequence data) with RESCRIPt

Please consider this tutorial a living document, which may change based upon community feedback and ongoing plugin development. RESCRIPt RESCRIPt (REference Sequence annotation and CuRatIon Pipeline) is a python package and QIIME 2 plugin for formatting, managing, and manipulating sequence reference databases. This package was designed for compiling, manipulating, and evaluating sequence reference databases from SILVA, NCBI, Greengenes, GTDB, and other sources, and for constru…

-Best wishes!
-Mike