Thanks in advance for reading this.
I am stuck at the import step of my sequences as I am not sure about the type definition.
My sequences are demultiplexed FASTQ R1 and R2 merged as following:
I made a manifest file with sample-id and absolute-filepath information and run the following command:
qiime tools import
--input-format WHAT SHOULD I TYPE HERE?
when I tried with SingleEndFastqManifestPhred33V2 it gave back an error.
Could you please help me to understand which format my sequences are?
Thank you very much!