Hi All!
I am trying to visualize my data in the most visually pleasing way and I came across @the_dummy 's Krona plug in which is perfect. I am able to plot my 16s Data in a bar plot in the way I am looking for but I am unsure how to get a different piechart for each of my treatments to compare them. I've attached the bar plot with the differentiation between treatments I am talking about and the pie chart I've been able to produce this far. Should I just generate a different table for each treatment? or is there a way to separate the treatments in qiime?
If there is more literature about using the Krona plug-in I would be grateful if someone could point me in the right direction.
Here is the pie chart I've generated with this code:
qiime krona collapse-and-plot
--i-table FilteredData/GroupFilteredTable10.qza
--i-taxonomy /Users/s.d./16sData-03/Silva_1381/taxa/classification.qza
--o-krona-plot PieChart.qzv
and here is a bar chart I've created with the correct treatment grouping.
I hope this makes sense, thanks for the help!