Running Qiime2 in Jupyter notebook

Hi, is it possible to run qiime2 in Jupyter note book which is installed in windows(Anaconda). If yes please let me know the details.

Thanks

Hi @Mukil,

Welcome to the :qiime2: forum.

QIIME won’t work directly within the windows file system at the moment. You could use a virtual box or install it on a partition or the windows linux subsystem, and then run inside a Jupyter notebook. But, I don’t think direct installation into anaconda would work because of the assumptions about the file structure.

Best,
Justine

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