February 14, 2023, 7:20pm
I have received Qiime output from a collaborator, but I want to run an additional PERMANOVA analysis to compare the beta diversity from my two groups. How can I import my qza/qzv files to Qiime to run the PERMANOVA. My collaborator has already shared the following code to run the analysis:
qiime diversity beta-group-significance
But I am just unsure how to get the qza, tsv, and qzv files which he sent me back into Qiime.
Any advice would be greatly appreciated.
February 14, 2023, 7:39pm
Hello and welcome to
The question you're asking has a detailed answer in the first QIIME 2 tutorial:
“Moving Pictures” tutorial — QIIME 2 2022.8.3 documentation
It's actually a code snippet from the tutorial.
February 14, 2023, 7:44pm
The part I don't understand is how to get the qza/qzv files back into Qiime. I did not generate them - my collaborator just emailed them to me.
I see that the tutorial has the following code:
But my data is not online. Would I just replace the URL with the path on my computer?
March 18, 2023, 3:31pm
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