reuse of qiime2 and dada2

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1

Hello,
I've been working with amplicon sequencing on fungis, and I'm curious if I can utilize the same pipeline that I previously employed for 16S rRNA data, particularly using Qiime2 and DADA2. Apart from changing the database (like SILVA), are there other modifications I need to consider and by that I mean modification in the script in order to generate this famous ASV file ?
I would be grateful if you could share a GitHub repository that covers this topic so I can compare the two scripts

thank you in advance

2

Hello @Will_Ericksen,

Is something like this what you're looking for?

3

yes Sir thank you very much

4

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