Return code 1 running DADA2 with single-end PGM/Ion torrent data

[thermokarst]

@WindTalker

–p-n-threads 60

Wow, that is a lot of threads!

@WindTalker

Error in writeFastq(fq, fout, “w”, compress = compress) :
failed to write record 125
Error in writeFastq(fq, fout, “w”, compress = compress) :
failed to write record 125
Error in writeFastq(fq, fout, “w”, compress = compress) :
failed to write record 125
Error in writeFastq(fq, fout, “w”, compress = compress) :
failed to write record 114
Error in writeFastq(fq, fout, “w”, compress = compress) :
failed to write record 114

Looks like you are running out of space, likely in your $TMPDIR. You will want to change that env var to another location with more disk space available (I suggest contacting your sys admin for guidance).