Hi,
I'm trying to install QIIME 2 on my cluster (Linux) using conda. When doing so, I run into a ResolvePackageNotFound error, which lists a large number of R packages (I'll paste the full error at the end of this message because it is long).
I used the commands:
conda update conda
conda clean --all
_wget https://data.qiime2.org/distro/core/qiime2-2018.11-py35-linux-conda.yml_
conda env create -n qiime2-2018.11 --file qiime2-2018.11-py35-linux-conda.yml
My current conda version is "4.5.11" and my conda-build version is "3.0.31". And the platform listed in "conda info" is "linux-64".
Could you please help point me in the direction of what I might be doing wrong or what might be causing this error?
Thank you very much!
Best,
Tim
Full command and error message:
conda env create -n qiime2-2018.11 --file qiime2-2018.11-py35-linux-conda.yml
Using Anaconda API: https://api.anaconda.org
Solving environment: failed
ResolvePackageNotFound:
-
r-cli=1.0.0
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r-crayon
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r-base=3.4.1
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_r-mutex=1[build=anacondar_1]
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r-cli=1.0.0
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r-assertthat
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r-mgcv=1.8_24
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r-matrix
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r-base=3.4.1
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_r-mutex=1[build=anacondar_1]
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r-mgcv=1.8_24
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r-matrix
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r-lattice
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r-mgcv=1.8_24
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r-nlme[version='>=3.1_64']
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r-rcppparallel=4.4.1
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r-base[version='>=3.4.1,<3.4.2.0a0']
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_r-mutex=1[build=anacondar_1]
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r-rcppparallel=4.4.1
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r-bh[version='>=1.60.0_1']
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r=3.3.1
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r-nlme=3.1_137
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r-lattice
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r-base[version='>=3.4.1,<3.4.2.0a0']
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_r-mutex=1[build=anacondar_1]
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r-gtable=0.2.0
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r-base[version='>=3.4.1,<3.4.2.0a0']
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bioconductor-biobase=2.38.0
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r-base=3.4.1
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bioconductor-biobase=2.38.0
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bioconductor-biocgenerics[version='>=0.3.2']
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r=3.3.1
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bioconductor-xvector=0.18.0
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r-base=3.4.1
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bioconductor-xvector=0.18.0
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bioconductor-s4vectors[version='>=0.15.14']
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bioconductor-biocgenerics[version='>=0.26.0,<0.28.0']
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bioconductor-xvector=0.18.0
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bioconductor-iranges[version='>=2.9.18']
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bioconductor-xvector=0.18.0
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bioconductor-zlibbioc
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r=3.3.1
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r-lazyeval=0.2.1
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r-base[version='>=3.4.1,<3.4.2.0a0']
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r-plyr=1.8.4
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r-base=3.4.1
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r-plyr=1.8.4
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r-rcpp[version='>=0.11.0']
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r-hwriter=1.3.2
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r-base=3.3.2
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r-hwriter=1.3.2
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r=3.3.1
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bioconductor-biocgenerics=0.24.0
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r-base=3.4.1
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r-stringi=1.2.4
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r-base[version='>=3.5.1,<3.5.2.0a0']
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_r-mutex=1[build=anacondar_1]
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r-ggplot2=3.1.0
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r-withr[version='>=2.0.0']
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r-base[version='>=3.5.1,<3.5.2.0a0']
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r-ggplot2=3.1.0
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r-fansi
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r-lazyeval[version='>=0.1.10']
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r-rcpp
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r-mass
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r-plyr[version='>=1.7.1']
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r-gtable[version='>=0.1.1']
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r-viridislite
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r-stringi[version='>=1.1.6']
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r-reshape2
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r-base[version='>=3.5.1,<3.5.2.0a0']
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r-base[version='>=3.5.1,<3.5.2.0a0']
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r-crayon
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r-cli
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r-assertthat
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r-rlang
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r-pillar[version='>=1.1.0']
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r-utf8[version='>=1.1.3']
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r-tibble=1.4.2
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r-pillar[version='>=1.1.0']
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r-fansi
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r-snow=0.4_3
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r-base[version='>=3.5.1,<3.5.2.0a0']
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r-viridislite
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r-bh
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q2-dada2=2018.11.0
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bioconductor-dada2==1.6.0=r3.4.1_0
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bioconductor-shortread[version='>=1.32.0']
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bioconductor-biocparallel[version='>=1.14.2,<1.16.0']
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r-futile.logger
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r-futile.options
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q2-dada2=2018.11.0
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bioconductor-dada2==1.6.0=r3.4.1_0
-
bioconductor-shortread[version='>=1.32.0']
-
bioconductor-biocparallel[version='>=1.14.2,<1.16.0']
-
r-futile.logger
-
r-lambda.r[version='>=1.1.0']
-
r-formatr
-
q2-dada2=2018.11.0
-
bioconductor-dada2==1.6.0=r3.4.1_0
-
bioconductor-shortread[version='>=1.32.0']
-
bioconductor-rsamtools[version='>=1.32.3,<1.34.0']
-
q2-dada2=2018.11.0
-
bioconductor-dada2==1.6.0=r3.4.1_0
-
bioconductor-shortread[version='>=1.32.0']
-
r-lattice
-
q2-dada2=2018.11.0
-
bioconductor-dada2==1.6.0=r3.4.1_0
-
bioconductor-shortread[version='>=1.32.0']
-
bioconductor-biobase[version='>=2.40.0,<2.42.0']
-
q2-dada2=2018.11.0
-
bioconductor-dada2==1.6.0=r3.4.1_0
-
bioconductor-shortread[version='>=1.32.0']
-
r-hwriter
-
q2-dada2=2018.11.0
-
bioconductor-dada2==1.6.0=r3.4.1_0
-
bioconductor-shortread[version='>=1.32.0']
-
bioconductor-genomicalignments[version='>=1.16.0,<1.18.0']
-
bioconductor-summarizedexperiment[version='>=1.10.1,<1.12.0']
-
r-matrix
-
q2-dada2=2018.11.0
-
bioconductor-dada2==1.6.0=r3.4.1_0
-
bioconductor-shortread[version='>=1.32.0']
-
bioconductor-genomicalignments[version='>=1.16.0,<1.18.0']
-
bioconductor-summarizedexperiment[version='>=1.10.1,<1.12.0']
-
bioconductor-delayedarray[version='>=0.6.6,<0.8.0']
-
r-matrixstats
-
q2-dada2=2018.11.0
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bioconductor-dada2==1.6.0=r3.4.1_0
-
bioconductor-shortread[version='>=1.32.0']
-
r-latticeextra
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r-rcolorbrewer
-
q2-dada2=2018.11.0
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bioconductor-dada2==1.6.0=r3.4.1_0
-
r-ggplot2[version='>=2.1.0']
-
r-tibble
-
r-cli
-
r-crayon
-
q2-dada2=2018.11.0
-
bioconductor-dada2==1.6.0=r3.4.1_0
-
r-ggplot2[version='>=2.1.0']
-
r-tibble
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r-cli
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r-assertthat
-
q2-dada2=2018.11.0
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bioconductor-dada2==1.6.0=r3.4.1_0
-
r-ggplot2[version='>=2.1.0']
-
r-tibble
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r-rlang
-
q2-dada2=2018.11.0
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bioconductor-dada2==1.6.0=r3.4.1_0
-
r-ggplot2[version='>=2.1.0']
-
r-tibble
-
r-pillar[version='>=1.1.0']
-
r-utf8[version='>=1.1.3']
-
q2-dada2=2018.11.0
-
bioconductor-dada2==1.6.0=r3.4.1_0
-
r-ggplot2[version='>=2.1.0']
-
r-tibble
-
r-pillar[version='>=1.1.0']
-
r-fansi
-
q2-dada2=2018.11.0
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bioconductor-dada2==1.6.0=r3.4.1_0
-
r-ggplot2[version='>=2.1.0']
-
r-tibble
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r-lazyeval[version='>=0.1.10']
-
q2-dada2=2018.11.0
-
bioconductor-dada2==1.6.0=r3.4.1_0
-
r-ggplot2[version='>=2.1.0']
-
r-mass
-
q2-dada2=2018.11.0
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bioconductor-dada2==1.6.0=r3.4.1_0
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r-ggplot2[version='>=2.1.0']
-
r-gtable[version='>=0.1.1']
-
q2-dada2=2018.11.0
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bioconductor-dada2==1.6.0=r3.4.1_0
-
r-ggplot2[version='>=2.1.0']
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r-digest
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q2-dada2=2018.11.0
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bioconductor-dada2==1.6.0=r3.4.1_0
-
r-ggplot2[version='>=2.1.0']
-
r-scales[version='>=0.4.1']
-
r-viridislite
-
q2-dada2=2018.11.0
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bioconductor-dada2==1.6.0=r3.4.1_0
-
r-ggplot2[version='>=2.1.0']
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r-scales[version='>=0.4.1']
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r-labeling
-
q2-dada2=2018.11.0
-
bioconductor-dada2==1.6.0=r3.4.1_0
-
r-ggplot2[version='>=2.1.0']
-
r-scales[version='>=0.4.1']
-
r-munsell[version='>=0.2']
-
r-colorspace
-
q2-dada2=2018.11.0
-
bioconductor-dada2==1.6.0=r3.4.1_0
-
r-ggplot2[version='>=2.1.0']
-
r-scales[version='>=0.4.1']
-
r-r6
-
q2-dada2=2018.11.0
-
bioconductor-dada2==1.6.0=r3.4.1_0
-
r-ggplot2[version='>=2.1.0']
-
r-scales[version='>=0.4.1']
-
r-dichromat
-
q2-dada2=2018.11.0
-
bioconductor-dada2==1.6.0=r3.4.1_0
-
r-ggplot2[version='>=2.1.0']
-
r-withr[version='>=2.0.0']
-
q2-dada2=2018.11.0
-
bioconductor-dada2==1.6.0=r3.4.1_0
-
r-ggplot2[version='>=2.1.0']
-
r-mgcv
-
r-nlme[version='>=3.1_64']
-
q2-dada2=2018.11.0
-
bioconductor-dada2==1.6.0=r3.4.1_0
-
r-rcppparallel[version='>=4.3.0']
-
r-colorspace=1.3_2
-
r-base=3.3.2
-
_r-mutex=1[build=anacondar_1]
-
r-bitops=1.0_6
-
r-base[version='>=3.5.1,<3.5.2.0a0']
-
_r-mutex=1[build=anacondar_1]