I am trying to retrieve sequence and taxonomy references for special functional gene (not 16S gene). In this page below it is redirected me to Blast page, but I do not know how to provide first my desired refseq by Blast. The page is empty, no option to pick it up. And I do not have any file to upload.
The desired organism is bacteria. I follow this page again:
By the way, in this command there is an example to extract taxonomy, but one option (‘33175[BioProject] OR 33317[BioProject]’) is unclear to me! How to provide this? I do not understand what it is.
qiime rescript get-ncbi-data \ --p-query '33175[BioProject] OR 33317[BioProject]' \ --o-sequences ncbi-refseqs-unfiltered.qza \ --o-taxonomy ncbi-refseqs-taxonomy-unfiltered.qza
Can I use
--p-n-jobs parameter in this command and other commands in this case? There is no special page for docstring and tutorial for reecript like other available plugins are installed in default for Qiime2. It is confusing.
I am looking forward to hearing from you.
Thanks a lot.