get-ncbi-data function returns a FeatureData[Sequence] formatted object, correct? If the NCBI data contains any gap (
-) characters, I’m wondering how to get rid of those with RESCRIPt/QIIME functions.
One option might be to use
qiime rescript degap-seqs, but the input for that is a different file format (FeatureData[AlignedSequence]). Perhaps @SoilRotifer might find a way to allow for the input to that function accept both AlignedSequence and Sequence format types?
Thanks for the assistance!