Renaming featureIDs in table.qza

Yiga_Fahim · January 4, 2024, 3:12pm

qiime feature-table rename-ids command runs without error, but IDs don't seem to change.
qiime feature-table rename-ids --i-table table.qza --m-metadata-file new_feature_IDs.tsv --m-metadata-column new-feature-id --o-renamed-table renamed-table.qza
qiime feature-table summarize --i-table renamed-table.qza --o-visualization renamed-table-summary.qzv

A snap look of my metadata file

feature-id	new-feature-id
0023be3e2a0864e6818b39ec587355b7	ASV1
18f05c14148f54ee6f45d54ebcac5997	ASV2
cafa10a4be98ea1aaea133ca08e79f51	ASV3
9005841674fbc68ef99a20f50d39c79e	ASV4
edbb2c13206fd30723d603996a4a6694	ASV5
582d329418cbace445d16e5cae9cdb46	ASV6
7052fec07eb43dc62901d80133441856	ASV7

Oddant1 · January 4, 2024, 4:15pm

Hello @Yiga_Fahim. It looks like you're trying to change the feature-ids. The command qiime feature-table rename-ids has a parameter called axis that defaults to sample. Can you try rerunning your command with the added argument --p-axis 'feature'? Thank you.

Yiga_Fahim · January 4, 2024, 4:49pm

Thank you so much, @Oddant1. That worked perfectly

system · February 4, 2024, 10:50pm

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