Removal of mitochondria and chloroplast - filter sequence vs filter taxonomy

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Hi @Sihan_Bu,

Sorry about that. My fault... I confused part of qiime feature-table filter-seqs with qiime taxa filter-seqs

I fixed my initial post. So, the command is not:

qiime feature-table filter-seqs \ 
  --i-sequences sequences.qza \
  --m-metadata-file  table-no-mitochondria-no-chloroplast.qza \
  --o-filtered-sequences sequences-no-mitochondria-no-chloroplast.qza

but should be:

qiime feature-table filter-seqs \ 
  --i-data  sequences.qza \
  --i-table  table-no-mitochondria-no-chloroplast.qza \
  --o-filtered-data sequences-no-mitochondria-no-chloroplast.qza
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