Random Forest heatmap priority numerical values

Hello! I was wondering if there is anyway to extract the numerical values associated with the important features in the heatmap obtained from running "qiime sample-classifier classify-samples"?

Hey there @redflag40!

You should already have the numerical values from this pipeline, saved to wherever you specified the --o-feature-importance output. You can export that file, or tabulate it!

Let us know how it goes! :qiime2:


We have looked at the feature_importance output before. What we are hoping we can find is the values for the colors in the heatmap between Q1 and Q2.

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Those are the abundances of those features/samples in your feature table. You can follow the same advice as above (export or tabulate), but using the feature table, instead of the importances.

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