@Cotissima: I'm sorry maybe I'm out off topic a little bit.
I've been trying to create phyloseq object woth the new Silva 138 with qiime2R, but I'm stucked.
This is the error message:
df must be a data frame without row names in column_to_rownames().
This is the codes which involved the taxonomy:
error_making_phyloseq.txt (3.3 KB)
I' m already try this methods:
[Tutorial: Integrating QIIME2 and R for data visualization and analysis using qiime2R]
But still stucked
Can I ask your workflow codes to import basic qiime2 files to successfully make phyloseq object?
Thank you and sorry for OOT.