Hi there
I'm interested in looking at a CSV table of the FDR corrected p-values after a gneiss regression summary (see files). I assume that the FDR values are likely more reliable than the un-corrected p-values?
Anyway, I am having troubles retrieving this information from the qvz file. I see on the heatmap, that many of the balances have coefficients and pvalues, however the file is empty when I download it. Could this be a bug, or does this mean that there are no p-values (i.e., the data is terrible :P).
Thanks!
Courtney
I'm using 2018.8.
qiime gneiss correlation-clustering \ --i-table $input_table \ --o-clustering hierarchy.qza qiime gneiss ilr-hierarchical \ --i-table $input_table \ --i-tree hierarchy.qza \ --o-balances balances.qza qiime gneiss ols-regression \ --p-formula "Sample_type" \ --i-table balances.qza \ --i-tree hierarchy.qza \ --m-metadata-file $metadatapath \ --o-visualization regression_summary_Sample_type.qzv
input_table -- filtered for more than 10 reads per feature across the samples
table.0.97.with-unassigned.0.7.frequencycutoff.10.RA1.qza (39.3 KB)
metadatatable
sample_info_all5.txt (5.0 KB)
CSV file downloaded from QIIME2view
fdr-corrected-pvalues (2).csv (3.3 KB)
Regression summary
regression_summary_Sample_type.qzv (180.7 KB)