Qiime2 silva 16s v3v4 classifier test output odd

[Nicholas_Bokulich]

HI @Xio_Lee,
See this post (and the rest of the thread) for a diagnosis and how to fix:

Wrong 'taxonomy.qzv' file

I think the issue is an aberrantly short sequence being created during the extract-reads step. There is only one taxonomy string that matches the one in question: LAFJ01000960.5.938 D_0__Archaea;D_1__Nanoarchaeaeota;D_2__Nanoarchaeia;D_3__Nanoarchaeales;D_4__Nanoarchaeaceae;D_5__Nanoarchaeum;D_6__hot springs metagenome And here is the 4 nucleotide sequence that is present for it in my extract-reads artifact file (the original full length read doesn't have any long stretches of N characters, s…

I hope that helps!