I’m completely new to Qiime2 so I apologize if this question has an obvious answer. I am currently using Qiime2 2019.1 using VirtualBox as my computer has a Windows OS. I have been trying to install the picrust2 plugin but keep getting an error despite multiple attempts. I am using the instructions provided at:
(also copied below):
- These instructions will assume you have a conda environment named
qiime2-2019.1installed. Activate this environment :
source activate qiime2-2019.1
- Download and install PICRUSt2 :
wget https://github.com/picrust/picrust2/releases/download/v2.0.3-b/picrust2-2.0.3-b.zip unzip picrust2-2.0.3-b.zip cd picrust2-2.0.3-b conda-env update -n qiime2-2019.1 -f picrust2-env.yaml pip install --editable .
- Test the installation :
pytest tests/test_hsp.py tests/test_metagenome_pipeline.py tests/test_run_minpath.py tests/test_util.py
- Download the q2-picrust2 plugin GitHub Repo and install.
cd .. wget https://github.com/gavinmdouglas/q2-picrust2/releases/download/v0.0.2/q2-picrust2-0.0.2.zip unzip q2-picrust2-0.0.2.zip cd q2-picrust2-0.0.2 python setup.py install qiime dev refresh-cache cd ..
When I then move on to working through the picrust2 running tutorial
https://github.com/picrust/picrust2/wiki/q2-picrust2-Tutorial I end up getting an error message: ModuleNotFoundError: No module named ‘picrust2’
I have tried this about 5 times and cannot seem to figure out where I’m going wrong. Any advice would be much appreciated!!