HI Evan, thanks for your help
When I run the command: conda create --name qiime2_2018.2 --file Environment_qiime2_2018_2.txt --offline /home/bioinf/miniconda2/pkgs/*.tar.bz2
I get the error:
Preparing transaction: done
Verifying transaction: done
Executing transaction: failed
ERROR conda.core.link:_execute(481): An error occurred while installing package '::jupyter_core-4.4.0-py_0'.
OSError(2, 'No such file or directory')
Attempting to roll back.
Rolling back transaction: done
OSError(2, 'No such file or directory')
Although the jupyter package is in the pkgs folder as a tar.bz2
When I run in verbose mode I get for every package:
file exists, but clobbering: u'/home/bioinf/miniconda2/envs/qiime2_2018.2/lib/python3.5/site-packages/pip/vcs/pycache/subversion.cpython-35.pyc'
and then:
===> LINKING PACKAGE: ::jupyter_core-4.4.0-py_0 <===
prefix=/home/bioinf/miniconda2/envs/qiime2_2018.2
source=/home/bioinf/miniconda2/pkgs/jupyter_core-4.4.0-py_0
===> REVERSING PACKAGE LINK: ::jupyter_core-4.4.0-py_0 <===
prefix=/home/bioinf/miniconda2/envs/qiime2_2018.2
done
Traceback (most recent call last):
File "/home/bioinf/miniconda2/lib/python2.7/site-packages/conda/exceptions.py", line 789, in call
return func(*args, **kwargs)
File "/home/bioinf/miniconda2/lib/python2.7/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/home/bioinf/miniconda2/lib/python2.7/site-packages/conda/cli/conda_argparse.py", line 77, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/home/bioinf/miniconda2/lib/python2.7/site-packages/conda/cli/main_create.py", line 11, in execute
install(args, parser, 'create')
File "/home/bioinf/miniconda2/lib/python2.7/site-packages/conda/cli/install.py", line 173, in install
explicit(args_packages, prefix, verbose=not context.quiet)
File "/home/bioinf/miniconda2/lib/python2.7/site-packages/conda/misc.py", line 90, in explicit
txn.execute()
File "/home/bioinf/miniconda2/lib/python2.7/site-packages/conda/core/link.py", line 225, in execute
self._execute(tuple(concat(interleave(itervalues(self.prefix_action_groups)))))
File "/home/bioinf/miniconda2/lib/python2.7/site-packages/conda/core/link.py", line 500, in _execute
rollback_excs,
CondaMultiError: [Errno 2] No such file or directory
It seems to me that he tries to write into the pkgs folder but doesnt want to install stuff in the envs/Qiime/
The installation file from the machine with the working installation looks like that:
folderEnvironment_qiime2_2018_2.txt (5.5 KB)
in case it helps, conda info gives me that:
active environment : None
user config file : /home/bioinf/.condarc
populated config files : /home/bioinf/.condarc
conda version : 4.4.10
conda-build version : not installed
python version : 2.7.14.final.0
base environment : /home/bioinf/miniconda2 (writable)
channel URLs : file:///home/bioinf/linux-64
file:///home/bioinf/noarch
file:///home/bioinf/miniconda2/pkgs/linux-64
file:///home/bioinf/miniconda2/pkgs/noarch
r/linux-64
r/noarch
main/linux-64
main/noarch
Anaconda packages for Linux x86_64 (64-bit)
Anaconda packages (noarch)
r/linux-64
r/noarch
Anaconda extras for Linux x86_64 (64-bit)
Anaconda extras (noarch)
conda-forge/linux-64
conda-forge/noarch
package cache : /home/bioinf/miniconda2/pkgs
/home/bioinf/.conda/pkgs
envs directories : /home/bioinf/miniconda2/envs
/home/bioinf/.conda/envs
platform : linux-64
user-agent : conda/4.4.10 requests/2.18.4 CPython/2.7.14 Linux/3.16.0-4-amd64 debian/8 glibc/2.19
UID:GID : 1000:1000
netrc file : None
offline mode : False