QIIME2 installation using pycharm

[SoilRotifer (Mike Robeson)]

Hi @kam,

Given this:

@kam

PS C:\Users\USER\PycharmProjects\QIIME2> conda install wget

It appears you are trying to run QIIME 2 directly within the Windows Command line. QIIME 2 can only be run through the Windows Subsystem for Linux (WSL). You can check out these threads for more details on how to do this:

Installation problems (win10, miniconda)

Hi @GeorgA, welcome to The error is due to the fact that you are trying install QIIME 2 through your Windows 10 Command Prompt, and not the Windows Subsystem for Linux (WSL). Check out the install instructions for WSL. If you search the forum, you'll find that these threads quite helpful: -Mike

Import data problem

Hi @Audrey_Anne, I think you are trying to use Windows command prompt syntax in your Ubuntu LTS. That is, this: Users\audre\Bureau\Projetmain should be: Users/audre/Bureau/Projetmain One trick that you can use to share files between your Windows and Ubuntu LTS is to do the following: In Ubuntu LTS terminal window type: explorer.exe . . This will open a Windows Explorer window with the path to your home directory within your Ubuntu LTS. See here. Drag this path in the window to your Quick…

-Mike