Yiggrite
(Yiggrite Wu)
1
Hi,
My demux.qza is like this:
how should I set the number in qiime2 dada2 denoise-paired?
i used these numbers from the tutorial, but i got 6 samples with feature count 0.
qiime dada2 denoise-paired **
--i-demultiplexed-seqs paired-end-demux.qza **
--p-trim-left-f 13 **
--p-trim-left-r 13 **
--p-trunc-len-f 150 **
--p-trunc-len-r 150 **
--o-table table.qza **
Is this the problem?
Thanks
cherman2
(Chloe Herman)
2
Hi @Yiggrite
We are gonna need more info to be able to help you!
-
What does your interactive quality plot look like?
-
What region are you working with?
-
What sequencing length did you order 2 x 150, 2 x 250 something else?
-
What tutorial are you using?
Have you checked out our qiime2 youtube channel? This channel has videos that can help answer your question. https://www.youtube.com/@QIIME2
1 Like
system
(system)
Closed
3
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