Qiime2 and R downstream analysis

[jbisanz (Jordan Bisanz)]

I think the same problem as below with a workaround. Will try to address this in a future update.

faith_pd_vector error in QIIME2r_V2 column

Welcome to the forums, @KBauer, Looks like the FaithPD table has a slightly different format, so you will have to use R to make the columns match. The function rownames_to_column() takes the dataframe's row names, and turns them into a normal column inside the dataframe. This appears to work well for the Shannon and and Evenness objects, where the rowname is the SampleID. After running rownames_to_column(), the SampleID is a column inside the dataframe next to the diversity values. For the Fa…