After setting up the qiime2-amplicon-2023.9 conda environment, there is a message:
To install TinyTeX with `tinytex::install_tinytex()` the system must have a functional Perl
installation with a `File::Find` module. Most end-user systems will already satisfy this
requirement; however, some minimal contexts (e.g., containers) may not. Perl is available
via Conda Forge as the package `perl`. See https://github.com/rstudio/tinytex/issues/419
I've read the github issue but I'm unclear as to what this pertains and if an additional installation is required. It seems the environment has perl, and the tinytex package mentioned in the github issue:
perl 5.32.1 7_hd590300_perl5 conda-forge
perl-archive-tar 2.40 pl5321hdfd78af_0 bioconda
perl-carp 1.50 pl5321hd8ed1ab_0 conda-forge
perl-common-sense 3.75 pl5321hdfd78af_0 bioconda
perl-compress-raw-bzip2 2.201 pl5321h87f3376_1 bioconda
perl-compress-raw-zlib 2.202 pl5321h166bdaf_0 conda-forge
perl-encode 3.19 pl5321hec16e2b_1 bioconda
perl-exporter 5.74 pl5321hd8ed1ab_0 conda-forge
perl-exporter-tiny 1.002002 pl5321hdfd78af_0 bioconda
perl-extutils-makemaker 7.70 pl5321hd8ed1ab_0 conda-forge
perl-io-compress 2.201 pl5321hdbdd923_2 bioconda
perl-io-zlib 1.14 pl5321hdfd78af_0 bioconda
perl-json 4.10 pl5321hdfd78af_0 bioconda
perl-json-xs 2.34 pl5321h4ac6f70_6 bioconda
perl-list-moreutils 0.430 pl5321hdfd78af_0 bioconda
perl-list-moreutils-xs 0.430 pl5321h031d066_2 bioconda
perl-parent 0.241 pl5321hd8ed1ab_0 conda-forge
perl-pathtools 3.75 pl5321hec16e2b_3 bioconda
perl-scalar-list-utils 1.63 pl5321h166bdaf_0 conda-forge
perl-storable 3.15 pl5321hec16e2b_3 bioconda
perl-types-serialiser 1.01 pl5321hdfd78af_0 bioconda
...
r-tinytex 0.48 r42hc72bb7e_1 conda-forge
Should the message be ignored or is additional action required?
Thanks,
Leon