I've installed qiime2-2018.2 environment on Linux using miniconda3.
The installation was ok, and qime2-2018.2 is in the list of environments.
When I try to activate the environment I get:
Also, there’s a new way of activating conda environments we could try.
If you ran:
conda activate qiime2-2018.2
It is probably going to print out a bunch of instructions like this:
CommandNotFoundError: Your shell has not been properly configured to use 'conda activate'.
If your shell is Bash or a Bourne variant, enable conda for the current user with
$ <redacted>
or, for all users, enable conda with
$ <redacted>
The options above will permanently enable the 'conda' command, but they do NOT
put conda's base (root) environment on PATH. To do so, run
$ <redacted>
in your terminal, or to put the base environment on PATH permanently, run
$ <redacted>
Previous to conda 4.4, the recommended way to activate conda was to modify PATH in
your ~/.bashrc file. You should manually remove the line that looks like
export PATH="/opt/Miniconda3/bin:$PATH"
^^^ The above line should NO LONGER be in your ~/.bashrc file! ^^^
If you follow the instructions that are printed to your terminal it may work better, and you would then use conda activate instead of source activate.