qiime2 2.2023 version

Technical Support
1

HI,Could anyone help for my case :slight_smile:
2023-03-13 13:25:35 (qiime2-2023.2) root@export PATH=$PATH:/opt/conda/envs/qiime2-2023.2/bins/qiime2-2023.2/bin
(qiime2-2023.2) root@b3159a37ba28:/data# echo $PATH
/opt/conda/envs/qiime2-2023.2/bin:/opt/conda/condabin:/opt/conda/envs/qiime2-2023.2/bin:/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/envs/qiime2-2023.2/bin
2023-03-13 13:30:32 (qiime2-2023.2) root@docker run -it -p 8080:8080 Quay
bash: docker: command not found
2023-03-13 13:31:03 (qiime2-2023.2) root@docker run -it -p 8080:8080 Quay
bash: docker: command not found. please

2

Hello @azithro13,

It looks like you do not have docker installed. Docker and qiime are separate software. Follow the appropriate instructions for you operating system to get docker installed.

Thanks!

2 Likes
3

I've been installed docker v4.17.0 since the last version of qiime2 2.2022, and I ran it, now I need to update to latest version 2.2023.
this is the image in docker but havn't PATH for the localhost 8080!!!:
Quay ( Quay) IN USE
367a3b3c47a8 CREATED 6 days ago SIZE 5.26 GB Run.
thanks.

4

Hi @azithro13,

Did you pull down the latest QIIME 2 image from Docker, and confirm that was successful?

Please follow our Docker instructions for pulling the latest release image:
https://docs.qiime2.org/2023.2/install/virtual/docker/

Cheers :lizard:

1 Like
5

Hi, I pull down the image successfully from Docker, then, I followed In a terminal with Docker activated, running :docker pull Quay.
with Confirmation of the installation:docker run -t -i -v $(pwd):/data quay.io/qiime2/core:2023.2 qiime.
after that on clicking the button of RUN in docker of the new image : quay.io/qiime2/core:2023.2
it appeared that this image haven't PORT (I think it's port to the localhost:8080)
I need to fix this.
thanks

7

Hi @azithro13,

Thanks for your patience! I will follow up with you shortly on next steps.

Cheers :lizard:

2 Likes
8

Hi lizgehret,
As we say in Arabic language The patience is the keys of everythings.
Thank you.

2 Likes
9

Hi @azithro13,

It looks like you are continuing this discussion here - I am going to close out this post and let Evan follow up with you in that thread to help keep things organized on our end. Thanks!