I have tried running qiime longitudinal linear-mixed-effects (conda installed 2023.2 on local machine, conda installed 2023.2 on cluster, and module on cluster 2021.4) and the job keeps getting killed after ~30 seconds with no other error message.
Local:
(qiime2-2023.2) % qiime longitudinal linear-mixed-effects \
--i-table relative_frequency_table.qza \
--m-metadata-file metadata_with_logratio.tsv \
--p-state-column timepoint_number \
--p-individual-id-column host_subject_id \
--p-group-columns collection_timepoint,source \
--p-random-effects plate_id,taxon_id \
--p-metric Current_Natural_Log_Ratio \
--o-visualization lr_LME_plot.qzv
**zsh: killed**
same if repeated with --verbose (no additional information given)
Cluster:
(qiime2-2023.2) -bash$ qiime longitudinal linear-mixed-effects --i-table relative_frequency_table.qza --m-metadata-file metadata_with_logratio.tsv --p-state-column timepoint_number --p-individual-id-column host_subject_id --p-group-columns collection_timepoint,source --p-random-effects plate_id,taxon_id --p-metric Current_Natural_Log_Ratio --o-visualization lr_LME_plot.qzv --verbose
**Killed**
(qiime2-2021.4) -bash$ qiime longitudinal linear-mixed-effects --i-table rarefied_relative_frequency_table.qza --m-metadata-file metadata_with_logratio.tsv --p-state-column timepoint_number --p-individual-id-column host_subject_id --p-group-columns collection_timepoint,source --p-random-effects plate_id,taxon_id --p-metric Current_Natural_Log_Ratio --o-visualization lr_LME_plot.qzv --verbose
**Killed**
I also tried minimizing the parameters, but no change.