Qiime installation on google colab

User Support
1

Dear All.

I have a problem installing the qiime 2 on google colab. I am using this command

!wget https://github.com/Gibbons-Lab/isb_course_2021/raw/main/setup_qiime2
%run setup_qiime2

the original notebook said, it should take around 10-15 min but for me it never finish the execution.
does anybody have any suggestion?

best Regards,
GH

2

Welcome to the forums!

We have our own install instructions over here, if you want to try those:
https://docs.qiime2.org/2023.7/install/native/

Here's the GitHub repo that script came from. Perhaps you could open an issue over there?

4

Dear Colin J Brislawn,

Thanks for your response.

I saw already the installation guides. I wanted to follow the tutorial on YouTube doing the analysis on the google Colab.

I followed your suggestion and opened an issue on the mentioned github page.

Thanks,

1 Like
5

The issue has been solved following Dr. Christian Diener on using 2023 version.

Thanks

1 Like
6

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