Hi everyone, I am using the following commands to mainly look at the dendrogram generated for the samples (to see if my samples cluster together)
qiime feature-table heatmap
- I am assuming --p-metric braycurtis uses the BC metric to cluster my samples. Is there a way to do this using weighted or unweighted uniFrac?
- Is there a way to generate or save the dendrogram alone without the heatmap?
- A way to control the number of features ( like the top 10, or top50 only)?
I read through the forum and found that I can do 3 using the qiime sample-classifier heatmap - but that requires me running the machine learning.
I would appreciate it if there is any other way to use the distance matrix to create a dendrogram.