Qiime 2017.7 installation error

I want to install the qiime 2 in conda environment but it is creating a problem here is command and its error message. How to deal with that?

conda create -n qiime2-2017.7 --file https://data.qiime2.org/distro/core/qiime2-2017.7-conda-linux-64.txt
CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/__pycache__/test_continuous_basic.cpython-35.pyc'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/__pycache__/test_discrete_basic.cpython-35.pyc'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/__pycache__/test_discrete_distns.cpython-35.pyc'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/__pycache__/test_distributions.cpython-35.pyc'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/__pycache__/test_fit.cpython-35.pyc'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/__pycache__/test_kdeoth.cpython-35.pyc'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/__pycache__/test_morestats.cpython-35.pyc'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/__pycache__/test_mstats_basic.cpython-35.pyc'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/__pycache__/test_mstats_extras.cpython-35.pyc'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/__pycache__/test_multivariate.cpython-35.pyc'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/__pycache__/test_rank.cpython-35.pyc'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/__pycache__/test_stats.cpython-35.pyc'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/__pycache__/test_tukeylambda_stats.cpython-35.pyc'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/common_tests.py'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/data/nist_anova/AtmWtAg.dat'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/data/nist_anova/SiRstv.dat'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/data/nist_anova/SmLs01.dat'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/data/nist_anova/SmLs02.dat'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/data/nist_anova/SmLs03.dat'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/data/nist_anova/SmLs04.dat'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/data/nist_anova/SmLs05.dat'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/data/nist_anova/SmLs06.dat'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/data/nist_anova/SmLs07.dat'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/data/nist_anova/SmLs08.dat'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/data/nist_anova/SmLs09.dat'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/data/nist_linregress/Norris.dat'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/test_binned_statistic.py'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/test_contingency.py'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/test_continuous_basic.py'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/test_discrete_basic.py'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/test_discrete_distns.py'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/test_distributions.py'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/test_fit.py'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/test_kdeoth.py'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/test_morestats.py'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/test_mstats_basic.py'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/test_mstats_extras.py'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/test_multivariate.py'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/test_rank.py'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/test_stats.py'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/tests/test_tukeylambda_stats.py'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/stats/vonmises.py'
specified in the package manifest cannot be found.

CondaVerificationError: The package for scipy located at /home/kamran/miniconda3/pkgs/scipy-0.19.1-np113py35_0
appears to be corrupted. The path 'lib/python3.5/site-packages/scipy/version.py'
specified in the package manifest cannot be found.

Hi @Junaid! Sorry to hear things aren’t going well with installation. This looks like there appears to be a problem with your installation of miniconda. Perhaps you could try cleaning the conda cache:

$ conda clean -y --all

Alternatively, you could reinstall miniconda, and then try to install QIIME 2. Please keep us posted!

This topic was automatically closed 31 days after the last reply. New replies are no longer allowed.