Below is the list of guaranteed environment file updates for the 2026.10 QIIME 2 release. You can use the linked environment files for each distribution to ensure compatibility with any plugin you're developing against the relevant distribution it should be tested/used within. Note that these 'seed' environment files won't change between now and the 2026.10 release, but the full environment files that conda will resolve at any given installation may change. This shouldn't impact your development process, as all of the core dependencies in these 'seed' files will remain the same.
TINY
linux environment file
osx environment file
- Dependency changes
- bibtexparser=1.4.3
- Plugin changes
- q2cli renamed to rachis-cli
QIIME2
linux environment file
osx environment file
NOTE: We are still working on a successful osx-arm64 build for the qiime2 distribution and hope to have this available by the end of the year
- Dependency changes
- bibtexparser=1.4.3
- r-svglite=2.2.2
- Plugin changes
- q2cli renamed to rachis-cli
- q2-fastp added
MOSHPIT
linux environment file
- Dependency changes
- bibtexparser=1.4.3
- mmseqs2=18.8cc5c
- usearch=12.0_beta
- Plugin changes
- q2cli renamed to rachis-cli
PATHOGENOME
linux environment file
- Dependency changes
- bibtexparser=1.4.3
- rgi=6.0.8
- Plugin changes
- q2cli renamed to rachis-cli
- q2-rgi added