QIIME 2 2022.8 compatibility with Jupyter Notebook?


I'm attempting to install Jupyter Notebook into a fresh QIIME 2 2022.8 environment on OSX and am so far unsuccessful. Is there a recommended way to use notebooks in 2022.8? The conflict output from conda is too long to be able to copy regrettably, and blows out my scroll buffer. The command used to install was $ conda install jupyter notebook.


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Apologies, I opened this in mistake. The jupyter package appears incompatible, however notebook is fine to install.

Hi, Daniel!

Try installing mamba and then everything works fine and the environment is solved much faster. Standard conda dependency solver is way slower and, in my experience, much more buggy.
For such bulky env as qiime2 mamba is a must.
I raised this point in docs already: replacing conda env creation with mamba for speed up by valentynbez · Pull Request #525 · qiime2/docs · GitHub



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