q2-metabolomics is a tool to import metabolomics data into qiime2 to perform analysis. This is accomplished in one of three ways:
- Given mzXML/mzML mass spectrometry files, MS2 spectrum count is generated by automatically analyzing data with GNPS (gnps.ucsd.edu) and outputs feature table qza
- Already analyzed with molecular networking in GNPS, import given a task identifier outputting a feature table qza
- Mass spectrometry MS1 features integrated with mzmine2 and outputting a feature table qza
conda install -c mwang87 q2-metabolomics
Checkout out more extensive readme for examples and tutorial!
Let us know if there are any issues, suggestions, or any feedback.
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