q2-fragment-insertion error

anak · July 8, 2020, 1:03am

Hi! i have this error message while running the pipeline from a tutorial published on protocols journal.
Plugin error from fragment-insertion:

Command ‘[‘run-sepp.sh’, ‘/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-q47x3vq_/7bdad9df-0019-4b7b-a402-54df834baafa/data/dna-sequences.fasta’, ‘q2-fragment-insertion’, ‘-x’, ‘4’, ‘-A’, ‘1000’, ‘-P’, ‘5000’, ‘-a’, ‘/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-av7lkfkm/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/aligned-dna-sequences.fasta’, ‘-t’, ‘/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-av7lkfkm/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/tree.nwk’, ‘-r’, ‘/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-av7lkfkm/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt’]’ returned non-zero exit status 1.

Can you help me please?

thermokarst · July 9, 2020, 2:46pm

We are missing a lot of important information that’ll help us to help you, @anak, please provide:

the version of QIIME 2 you are using
the exact commands you ran, copy-and-paste
the complete error observed, copy-and-paste (if using the --verbose flag), or upload the error log.

anak · July 9, 2020, 4:55pm

I´m sorry.
I´m using the new release qiime2 2020.6.

mi command
qiime fragment-insertion sepp
–i-representative-sequences rep-seqs-deblur.qza
–i-reference-database sepp-refs-gg-13-8.qza
–p-threads 4 \ (i´ve tried from 1 to 4 threads and still does not work)
–o-tree insertion-tree.qza
–o-placements insertion-placements.qza

the error:
Plugin error from fragment-insertion:

Command ‘[‘run-sepp.sh’, ‘/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-kiyyb823/7bdad9df-0019-4b7b-a402-54df834baafa/data/dna-sequences.fasta’, ‘q2-fragment-insertion’, ‘-x’, ‘1’, ‘-A’, ‘1000’, ‘-P’, ‘5000’, ‘-a’, ‘/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-d8jh5yy3/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/aligned-dna-sequences.fasta’, ‘-t’, ‘/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-d8jh5yy3/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/tree.nwk’, ‘-r’, ‘/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-d8jh5yy3/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt’]’ returned non-zero exit status 1.

Debug info has been saved to /var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-q2cli-err-s1o8o0ij.log

Thanks!

thermokarst · July 9, 2020, 5:12pm

Thanks @anak - please re-run, with these modifications:

qiime fragment-insertion sepp \
  --i-representative-sequences rep-seqs-deblur.qza \
  --i-reference-database sepp-refs-gg-13-8.qza \
  --p-threads 1 \
  --o-tree insertion-tree.qza \
  --o-placements insertion-placements.qza \
  --verbose \
  --p-debug

This command will fail as above, but will give us the --verbose information I asked for above, as well as some additional sepp-specific debug information.

anak · July 12, 2020, 11:57pm

thermokarst:

qiime fragment-insertion sepp \
  --i-representative-sequences rep-seqs-deblur.qza \
  --i-reference-database sepp-refs-gg-13-8.qza \
  --p-threads 1 \
  --o-tree insertion-tree.qza \
  --o-placements insertion-placements.qza \
  --verbose \
  --p-debug

Oh no! this is the right one, i´m really sorry.

========= Execution of SEPP failed with exit code 1 =================
temporary working directories are NOT deleted for further inspection:
  $tmp = /var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/sepp-tmp-XXXXXXXXXX.O51OThmE
  $tmpssd = /var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/sepp-tempssd-XXXXXXXXXX.OguOW5Om
--------- Content of STDOUT -----------------------------------------
--------- Content of STDERR -----------------------------------------
Traceback (most recent call last):
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/bin/run_sepp.py", line 4, in <module>
    __import__('pkg_resources').run_script('sepp==4.3.10', 'run_sepp.py')
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/pkg_resources/__init__.py", line 666, in run_script
    self.require(requires)[0].run_script(script_name, ns)
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/pkg_resources/__init__.py", line 1463, in run_script
    exec(code, namespace, namespace)
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/sepp-4.3.10-py3.6.egg-info/scripts/run_sepp.py", line 3, in <module>
    from sepp.exhaustive import ExhaustiveAlgorithm
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/sepp/exhaustive.py", line 6, in <module>
    from sepp.algorithm import AbstractAlgorithm
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/sepp/algorithm.py", line 11, in <module>
    from sepp.tree import PhylogeneticTree
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/sepp/tree.py", line 23, in <module>
    from dendropy import Tree, Taxon, treecalc
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/dendropy/__init__.py", line 24, in <module>
    from dendropy.dataio.nexusprocessing import get_rooting_argument
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/dendropy/dataio/__init__.py", line 20, in <module>
    from dendropy.dataio import newickreader
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/dendropy/dataio/newickreader.py", line 27, in <module>
    from dendropy.utility.textprocessing import StringIO
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/dendropy/utility/textprocessing.py", line 40, in <module>
    ENCODING = locale.getdefaultlocale()[1]
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/locale.py", line 562, in getdefaultlocale
    return _parse_localename(localename)
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/locale.py", line 490, in _parse_localename
    raise ValueError('unknown locale: %s' % localename)
ValueError: unknown locale: UTF-8
=====================================================================
Traceback (most recent call last):
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/q2cli/commands.py", line 329, in __call__
    results = action(**arguments)
  File "<decorator-gen-305>", line 2, in sepp
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/qiime2/sdk/action.py", line 245, in bound_callable
    output_types, provenance)
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/qiime2/sdk/action.py", line 390, in _callable_executor_
    output_views = self._callable(**view_args)
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/q2_fragment_insertion/_insertion.py", line 77, in sepp
    debug)
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/q2_fragment_insertion/_insertion.py", line 53, in _run
    subprocess.run(cmd, check=True, cwd=cwd)
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/subprocess.py", line 438, in run
    output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command '['run-sepp.sh', '/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-su91n94t/7bdad9df-0019-4b7b-a402-54df834baafa/data/dna-sequences.fasta', 'q2-fragment-insertion', '-x', '1', '-A', '1000', '-P', '5000', '-a', '/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-nbcvh98q/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/aligned-dna-sequences.fasta', '-t', '/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-nbcvh98q/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/tree.nwk', '-r', '/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-nbcvh98q/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt', '-b', '1']' returned non-zero exit status 1.

Plugin error from fragment-insertion:

  Command '['run-sepp.sh', '/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-su91n94t/7bdad9df-0019-4b7b-a402-54df834baafa/data/dna-sequences.fasta', 'q2-fragment-insertion', '-x', '1', '-A', '1000', '-P', '5000', '-a', '/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-nbcvh98q/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/aligned-dna-sequences.fasta', '-t', '/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-nbcvh98q/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/tree.nwk', '-r', '/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-nbcvh98q/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt', '-b', '1']' returned non-zero exit status 1.

See above for debug info.

thermokarst · July 13, 2020, 4:43pm

No worries - thanks!

This is perfect, the error is showing up right here:

Please see this topic for more discussion and detail:

You might need to talk with the sysadmin of this computer to see about configuring your environment variables. Please keep us posted!

anak · July 15, 2020, 4:16am

hi! it´s mi personal computer, so i did set it like this:
LANG=“UTF-8”

LC_COLLATE=“C”

LC_CTYPE=“C”

LC_MESSAGES=“C”

LC_MONETARY=“C”

LC_NUMERIC=“C”

LC_TIME=“C”

LC_ALL=

and still get the same error message…could you tell me how does it have look like?
Thanks!

anak · July 15, 2020, 4:30am

Then i´ve tried this setting:

LANG=“en_US.UTF-8”

LC_COLLATE=“en_US.UTF-8”

LC_CTYPE=“UTF-8”

LC_MESSAGES=“en_US.UTF-8”

LC_MONETARY=“en_US.UTF-8”

LC_NUMERIC=“en_US.UTF-8”

LC_TIME=“en_US.UTF-8”

LC_ALL=

and i´ve got the same error…

========= Execution of SEPP failed with exit code 1 =================
temporary working directories are NOT deleted for further inspection:
  $tmp = /var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/sepp-tmp-XXXXXXXXXX.7AMfqgcJ
  $tmpssd = /var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/sepp-tempssd-XXXXXXXXXX.MUFzpAdm
--------- Content of STDOUT -----------------------------------------
--------- Content of STDERR -----------------------------------------
Traceback (most recent call last):
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/bin/run_sepp.py", line 4, in <module>
    __import__('pkg_resources').run_script('sepp==4.3.10', 'run_sepp.py')
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/pkg_resources/__init__.py", line 666, in run_script
    self.require(requires)[0].run_script(script_name, ns)
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/pkg_resources/__init__.py", line 1463, in run_script
    exec(code, namespace, namespace)
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/sepp-4.3.10-py3.6.egg-info/scripts/run_sepp.py", line 3, in <module>
    from sepp.exhaustive import ExhaustiveAlgorithm
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/sepp/exhaustive.py", line 6, in <module>
    from sepp.algorithm import AbstractAlgorithm
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/sepp/algorithm.py", line 11, in <module>
    from sepp.tree import PhylogeneticTree
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/sepp/tree.py", line 23, in <module>
    from dendropy import Tree, Taxon, treecalc
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/dendropy/__init__.py", line 24, in <module>
    from dendropy.dataio.nexusprocessing import get_rooting_argument
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/dendropy/dataio/__init__.py", line 20, in <module>
    from dendropy.dataio import newickreader
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/dendropy/dataio/newickreader.py", line 27, in <module>
    from dendropy.utility.textprocessing import StringIO
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/dendropy/utility/textprocessing.py", line 40, in <module>
    ENCODING = locale.getdefaultlocale()[1]
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/locale.py", line 562, in getdefaultlocale
    return _parse_localename(localename)
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/locale.py", line 490, in _parse_localename
    raise ValueError('unknown locale: %s' % localename)
ValueError: unknown locale: UTF-8
=====================================================================
Traceback (most recent call last):
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/q2cli/commands.py", line 329, in __call__
    results = action(**arguments)
  File "<decorator-gen-305>", line 2, in sepp
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/qiime2/sdk/action.py", line 245, in bound_callable
    output_types, provenance)
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/qiime2/sdk/action.py", line 390, in _callable_executor_
    output_views = self._callable(**view_args)
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/q2_fragment_insertion/_insertion.py", line 77, in sepp
    debug)
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/site-packages/q2_fragment_insertion/_insertion.py", line 53, in _run
    subprocess.run(cmd, check=True, cwd=cwd)
  File "/Users/anaviggiano/opt/anaconda3/envs/qiime2-2020.6/lib/python3.6/subprocess.py", line 438, in run
    output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command '['run-sepp.sh', '/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-_z9sxceu/606e74e2-ecc6-45c4-9553-03d6fd257c14/data/dna-sequences.fasta', 'q2-fragment-insertion', '-x', '1', '-A', '1000', '-P', '5000', '-a', '/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-lhshi5ug/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/aligned-dna-sequences.fasta', '-t', '/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-lhshi5ug/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/tree.nwk', '-r', '/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-lhshi5ug/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt', '-b', '1']' returned non-zero exit status 1.

Plugin error from fragment-insertion:

  Command '['run-sepp.sh', '/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-_z9sxceu/606e74e2-ecc6-45c4-9553-03d6fd257c14/data/dna-sequences.fasta', 'q2-fragment-insertion', '-x', '1', '-A', '1000', '-P', '5000', '-a', '/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-lhshi5ug/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/aligned-dna-sequences.fasta', '-t', '/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-lhshi5ug/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/tree.nwk', '-r', '/var/folders/24/cb70tx1s4l5clr5s1_fbdmrc0000gn/T/qiime2-archive-lhshi5ug/a14c6180-506b-4ecb-bacb-9cb30bc3044b/data/raxml-info.txt', '-b', '1']' returned non-zero exit status 1.

i appreciate the help!

thermokarst · July 16, 2020, 8:02pm

Did you do that before you posted this issue, or after? Either way, you can't just change those values without doing a little bit of due diligence - we need to figure out what your available locales are:

locale -a

Also please run:

locale

to show us the current registered locale settings.

anak · July 17, 2020, 5:44pm

I did it after. that what i get with locale
LANG=""

LC_COLLATE="C"

LC_CTYPE="UTF-8"

LC_MESSAGES="C"

LC_MONETARY="C"

LC_NUMERIC="C"

LC_TIME="C"

LC_ALL=

thermokarst · July 17, 2020, 6:37pm

@anak, please run the first command, too:

We need that first, in order to figure out what the available locale settings are.

anak · July 17, 2020, 7:12pm

i´m sorry. Here it is…

en_NZ

nl_NL.UTF-8

pt_BR.UTF-8

fr_CH.ISO8859-15

eu_ES.ISO8859-15

en_US.US-ASCII

af_ZA

bg_BG

cs_CZ.UTF-8

fi_FI

zh_CN.UTF-8

eu_ES

sk_SK.ISO8859-2

nl_BE

fr_BE

sk_SK

en_US.UTF-8

en_NZ.ISO8859-1

de_CH

sk_SK.UTF-8

de_DE.UTF-8

am_ET.UTF-8

zh_HK

be_BY.UTF-8

uk_UA

pt_PT.ISO8859-1

en_AU.US-ASCII

kk_KZ.PT154

en_US

nl_BE.ISO8859-15

de_AT.ISO8859-1

hr_HR.ISO8859-2

fr_FR.ISO8859-1

af_ZA.UTF-8

am_ET

fi_FI.ISO8859-1

ro_RO.UTF-8

af_ZA.ISO8859-15

en_NZ.UTF-8

fi_FI.UTF-8

hr_HR.UTF-8

da_DK.UTF-8

ca_ES.ISO8859-1

en_AU.ISO8859-15

ro_RO.ISO8859-2

de_AT.UTF-8

pt_PT.ISO8859-15

sv_SE

fr_CA.ISO8859-1

fr_BE.ISO8859-1

en_US.ISO8859-15

it_CH.ISO8859-1

en_NZ.ISO8859-15

en_AU.UTF-8

de_AT.ISO8859-15

af_ZA.ISO8859-1

hu_HU.UTF-8

et_EE.UTF-8

he_IL.UTF-8

uk_UA.KOI8-U

be_BY

kk_KZ

hu_HU.ISO8859-2

it_CH

pt_BR

ko_KR

it_IT

fr_BE.UTF-8

ru_RU.ISO8859-5

zh_TW

zh_CN.GB2312

no_NO.ISO8859-15

de_DE.ISO8859-15

en_CA

fr_CH.UTF-8

sl_SI.UTF-8

uk_UA.ISO8859-5

pt_PT

hr_HR

cs_CZ

fr_CH

he_IL

zh_CN.GBK

zh_CN.GB18030

fr_CA

pl_PL.UTF-8

ja_JP.SJIS

sr_YU.ISO8859-5

be_BY.CP1251

sr_YU.ISO8859-2

sv_SE.UTF-8

sr_YU.UTF-8

de_CH.UTF-8

sl_SI

de_DE-A.ISO8859-1

pt_PT.UTF-8

ro_RO

en_NZ.US-ASCII

ja_JP

zh_CN

fr_CH.ISO8859-1

ko_KR.eucKR

be_BY.ISO8859-5

nl_NL.ISO8859-15

en_GB.ISO8859-1

en_CA.US-ASCII

is_IS.ISO8859-1

ru_RU.CP866

nl_NL

fr_CA.ISO8859-15

sv_SE.ISO8859-15

hy_AM

en_CA.ISO8859-15

en_US.ISO8859-1

zh_TW.Big5

ca_ES.UTF-8

ru_RU.CP1251

en_GB.UTF-8

en_GB.US-ASCII

ru_RU.UTF-8

eu_ES.UTF-8

es_ES.ISO8859-1

hu_HU

el_GR.ISO8859-7

en_AU

it_CH.UTF-8

en_GB

sl_SI.ISO8859-2

ru_RU.KOI8-R

nl_BE.UTF-8

et_EE

fr_FR.ISO8859-15

cs_CZ.ISO8859-2

lt_LT.UTF-8

pl_PL.ISO8859-2

fr_BE.ISO8859-15

is_IS.UTF-8

tr_TR.ISO8859-9

da_DK.ISO8859-1

lt_LT.ISO8859-4

lt_LT.ISO8859-13

zh_TW.UTF-8

bg_BG.CP1251

el_GR.UTF-8

be_BY.CP1131

da_DK.ISO8859-15

is_IS.ISO8859-15

no_NO.ISO8859-1

nl_NL.ISO8859-1

nl_BE.ISO8859-1

sv_SE.ISO8859-1

pt_BR.ISO8859-1

zh_CN.eucCN

it_IT.UTF-8

en_CA.UTF-8

uk_UA.UTF-8

de_CH.ISO8859-15

de_DE.ISO8859-1

ca_ES

sr_YU

hy_AM.ARMSCII-8

ru_RU

zh_HK.UTF-8

eu_ES.ISO8859-1

is_IS

bg_BG.UTF-8

ja_JP.UTF-8

it_CH.ISO8859-15

fr_FR.UTF-8

ko_KR.UTF-8

et_EE.ISO8859-15

kk_KZ.UTF-8

ca_ES.ISO8859-15

en_IE.UTF-8

es_ES

de_CH.ISO8859-1

en_CA.ISO8859-1

es_ES.ISO8859-15

en_AU.ISO8859-1

el_GR

da_DK

no_NO

it_IT.ISO8859-1

en_IE

zh_HK.Big5HKSCS

hi_IN.ISCII-DEV

ja_JP.eucJP

it_IT.ISO8859-15

pl_PL

ko_KR.CP949

fr_CA.UTF-8

fi_FI.ISO8859-15

en_GB.ISO8859-15

fr_FR

hy_AM.UTF-8

no_NO.UTF-8

es_ES.UTF-8

de_AT

tr_TR.UTF-8

de_DE

lt_LT

tr_TR

C

POSIX

thermokarst · July 22, 2020, 11:03pm

Perfect, thanks @anak!

It looks like you are on a macos machine (please correct me if I misunderstood). Based on what you provided above, it looks like you have tried to set your locale to American english:

Based on the output of your available locales, I see the following, confirming your choice:

So, one possible solution is to make sure you set all of the variables above to the same locale:

LANG="en_US.UTF-8"
LC_COLLATE="en_US.UTF-8"
LC_CTYPE="en_US.UTF-8"
LC_MESSAGES="en_US.UTF-8"
LC_MONETARY="en_US.UTF-8"
LC_NUMERIC="en_US.UTF-8"
LC_TIME="en_US.UTF-8"
LC_ALL="en_US.UTF-8"

If you prefer a different language setting, just make sure you specify the same setting everywhere.

Give that a shot and let us know how it goes!

system · August 23, 2020, 5:03am

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