Q2 beta-div PERMANOVA results different from adonis in R

[Nicholas_Bokulich]

@ange

But for this purpose I would just like to use R for visualizing qiime2 data

have you seen qiime2r? this greatly simplifies the process of transferring data to R:

Tutorial: Integrating QIIME2 and R for data visualization and analysis using qiime2R

Tutorial: Integrating QIIME2 and R for data visualization and analysis using qiime2R (March 2020 Update v0.99.20) Background The qiime artifact is a method for storing the input and outputs for QIIME2 along with associated metadata and provenance information about how the object was formed. This method of storing objects has a number of obvious advantages; however, on the surface it does not lend itself to easy import to R for the R-minded data scientist. In reality, the .qza file is a compresse…