Many thanks @colinbrislawn !
In my understanding,
- use 'convert_fastaqual_fastq.py' to create a FASTQ file.
- Then, import it using 'SingleEndFastqManifestPhred33V2'.
- Next, utilize Cutadapt to remove the selected primer information.
- Afterwards, proceed with 'dada2-denoise-single' for denoising.
Is that correct?
Thank you for your support !