I’m having an issue with running Songbird in Qiime2. I was able to follow the steps in “2. Using Songbird through Qiime2” as detailed in the following link (GitHub - biocore/songbird: Vanilla regression methods for microbiome differential abundance analysis). I successfully installed Songbird and imported the necessary data. However, when actually running Songbird, I come across an error that reads:
Plugin error from songbird:
- ‘DataFrame’ object has no attribute ‘to_dense’*
Debug info has been saved to /tmp/qiime2-q2cli-err-br8wsjj0.log
I’m unsure how to resolve this ‘DataFrame’ issue. I’ve attached a copy of the error log in a txt. file below as a reference:
qiime2-q2cli-err-br8wsjj0.txt (1008 Bytes)
Is there a potential solution to this issue? I am very new to using Qiime2/Songbird and bioinformatics in general, so additional details and instructions would very much be helpful. I am using Qiime2 in Linux on VirtualBox on a Windows PC. I have Qiime2 2020.11 installed.