Hi,
I've been trying to install Qiime2, I am on a Windows 10 Home
Processor Intel(R) Core(TM) i7-10510U CPU @ 1.80GHz 2.30 GHz
Installed RAM 16.0 GB (15.7 GB usable)
System type 64-bit operating system, x64-based processor
I installed Miniconda3 with python 3.9 (then tried 3.8 to see if it helps), updated conda with:
conda update conda
then installed wget with conda install -c menpo wget and run:
wget https://data.qiime2.org/distro/core/qiime2-2022.2-py38-linux-conda.yml
conda env create -n qiime2-2022.2 --file qiime2-2022.2-py38-linux-conda.yml
The conda environment can't be created and this is the resulting output:
(base) C:\Users\sapir>conda env create -n qiime2-2022.2 --file qiime2-2022.2-py38-linux-conda.yml -v
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed
Traceback (most recent call last):
File "C:\Users\sapir\miniconda3\lib\site-packages\conda\exceptions.py", line 1082, in call
return func(*args, **kwargs)
File "C:\Users\sapir\miniconda3\lib\site-packages\conda_env\cli\main.py", line 80, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "C:\Users\sapir\miniconda3\lib\site-packages\conda_env\cli\main_create.py", line 142, in execute
result[installer_type] = installer.install(prefix, pkg_specs, args, env)
File "C:\Users\sapir\miniconda3\lib\site-packages\conda_env\installers\conda.py", line 50, in install
unlink_link_transaction = solver.solve_for_transaction(
File "C:\Users\sapir\miniconda3\lib\site-packages\conda\core\solve.py", line 152, in solve_for_transaction
unlink_precs, link_precs = self.solve_for_diff(update_modifier, deps_modifier,
File "C:\Users\sapir\miniconda3\lib\site-packages\conda\core\solve.py", line 195, in solve_for_diff
final_precs = self.solve_final_state(update_modifier, deps_modifier, prune, ignore_pinned,
File "C:\Users\sapir\miniconda3\lib\site-packages\conda\core\solve.py", line 313, in solve_final_state
ssc = self._add_specs(ssc)
File "C:\Users\sapir\miniconda3\lib\site-packages\conda\core\solve.py", line 603, in _add_specs
explicit_pool = ssc.r._get_package_pool(self.specs_to_add)
File "C:\Users\sapir\miniconda3\lib\site-packages\conda\resolve.py", line 555, in _get_package_pool
pool = self.get_reduced_index(specs)
File "C:\Users\sapir\miniconda3\lib\site-packages\conda\common\io.py", line 88, in decorated
return f(*args, **kwds)
File "C:\Users\sapir\miniconda3\lib\site-packages\conda\resolve.py", line 576, in get_reduced_index
explicit_specs, features = self.verify_specs(explicit_specs)
File "C:\Users\sapir\miniconda3\lib\site-packages\conda\resolve.py", line 288, in verify_specs
raise ResolvePackageNotFound(bad_deps)
conda.exceptions.ResolvePackageNotFound:
- vsearch=2.7.0
- q2-fragment-insertion=2022.2.0
- fasttree=2.1.10
- unifrac=0.20.3
- pbzip2=1.1.13
- q2templates=2022.2.0
- q2-alignment=2022.2.0
- q2-gneiss=2022.2.0
- bioconductor-zlibbioc=1.40.0
- q2-metadata=2022.2.0
- ncurses=6.2
- q2-composition=2022.2.0
- perl-compress-raw-zlib=2.101
- libgomp=11.2.0
- perl-io-compress=2.102
- q2-types=2022.2.0
- q2-cutadapt=2022.2.0
- _openmp_mutex=4.5
- sed=4.8
- sepp=4.3.10
- raxml=8.2.12
- q2-feature-classifier=2022.2.0
- hmmer=3.1b2
- gxx_linux-64=9.4.0
- q2-diversity-lib=2022.2.0
- perl-json-xs=2.34
- dbus=1.13.6
- q2-sample-classifier=2022.2.0
- libstdcxx-devel_linux-64=9.4.0
- nss=3.74
- q2-longitudinal=2022.2.0
- binutils_impl_linux-64=2.36.1
- q2-diversity=2022.2.0
- samtools=1.14
- entrez-direct=16.2
- bioconductor-xvector=0.34.0
- libgcc-devel_linux-64=9.4.0
- gxx_impl_linux-64=9.4.0
- q2-taxa=2022.2.0
- bioconductor-biocparallel=1.28.0
- bioconductor-biobase=2.54.0
- gfortran_linux-64=9.4.0
- bioconductor-rhtslib=1.26.0
- blast=2.12.0
- ld_impl_linux-64=2.36.1
- q2-mystery-stew=2022.2.0
- libgfortran-ng=11.2.0
- libnsl=2.0.0
- perl-compress-raw-bzip2=2.101
- bioconductor-s4vectors=0.32.0
- bioconductor-biostrings=2.62.0
- gfortran_impl_linux-64=9.4.0
- libgfortran5=11.2.0
- perl-scalar-list-utils=1.61
- perl-encode=3.16
- bowtie2=2.4.5
- perl-pathtools=3.75
- bioconductor-genomicalignments=1.30.0
- gcc_impl_linux-64=9.4.0
- gcc_linux-64=9.4.0
- bioconductor-shortread=1.52.0
- bioconductor-iranges=2.28.0
- bioconductor-dada2=1.22.0
- bioconductor-rsamtools=2.10.0
- q2cli=2022.2.0
- q2-deblur=2022.2.0
- tktable=2.10
- readline=8.1
- libgcc-ng=11.2.0
- perl-list-moreutils-xs=0.430
- libuuid=2.32.1
- bioconductor-genomicranges=1.46.0
- qiime2=2022.2.0
- libxkbcommon=1.0.3
- q2-demux=2022.2.0
- libgcc=7.2.0
- q2-quality-filter=2022.2.0
- hdmedians=0.14.2
- nspr=4.32
- q2-phylogeny=2022.2.0
- libev=4.33
- sortmerna=2.0
- q2-vsearch=2022.2.0
- dnaio=0.7.1
- libstdcxx-ng=11.2.0
- q2galaxy=2022.2.0
- emperor=1.0.3
- libedit=3.1.20191231
- binutils_linux-64=2.36
- iqtree=2.2.0_beta
- q2-feature-table=2022.2.0
- bioconductor-delayedarray=0.20.0
- libsanitizer=9.4.0
- q2-quality-control=2022.2.0
- alsa-lib=1.2.3
- q2-emperor=2022.2.0
- scikit-bio=0.5.6
- libnghttp2=1.46.0
- mafft=7.490
- htslib=1.14
- cutadapt=3.5
- q2-dada2=2022.2.0
A colleague with a Mac Air was able to follow the same commands and process smoothly and did install correctly. What can I do to successfully install on my Windows machine?
Thank you,
Sapir