Problem importing SAMPLE is not a(n) FastqGzFormat file: Missing sequence for record beginning on line 33313

Hello again Nickole,

I wonder if this is an issue with how cutadapt processed the sequences for demultiplexing. Perhaps it choose to output reads with zero base-pairs, leading to this error.

Could you post the full cutadapt command you ran outside of Qiime2 so we can take a look?

x-ref to last post about demultiplexing these strange reads :face_with_monocle: