Problem importing fastq.qz from a MinION sequencing to qiime2

User Support
#1

Helo! I have a problem importing fastq.qz from a metagenomic sequencing with MinION (mk1c), I tried with FeatureData[Sequence], ‘SampleData[Sequences]’, 'SampleData[SingleEndSequencesWithQuality]', 'SampleData[SingleEndSequencesWithQuality]'. The sample its not multiplexed and every time I get that doesn't find any file or doesn't have correct format.

#2

qiime tools import
--type 'SampleData[SingleEndSequencesWithQuality]'
--input-path pass
--output-path biofiltro.qza

Traceback (most recent call last):
File "/Users/vicentearriagada/miniconda3/envs/qiime2-2022.2/lib/python3.8/site-packages/q2cli/builtin/tools.py", line 157, in import_data
artifact = qiime2.sdk.Artifact.import_data(type, input_path,
File "/Users/vicentearriagada/miniconda3/envs/qiime2-2022.2/lib/python3.8/site-packages/qiime2/sdk/result.py", line 250, in import_data
output_dir_fmt = pm.get_directory_format(type_)
File "/Users/vicentearriagada/miniconda3/envs/qiime2-2022.2/lib/python3.8/site-packages/qiime2/sdk/plugin_manager.py", line 354, in get_directory_format
raise TypeError(
TypeError: Semantic type SampleData[SingleEndSequencesWithQuality] does not have a compatible directory format.

An unexpected error has occurred:

Semantic type SampleData[SingleEndSequencesWithQuality] does not have a compatible directory format.

See above for debug info.

#3

Hello @vicenteam,

Thank you for your patiance. I think I found the problem:

I checked the importing examples, and couldn't find a mention of 'SingleEndSequencesWithQuality'. Did you mean to use 'SampleData[SequencesWithQuality]'?

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